Lactobacillus capillatus DSM 19910

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Liquorilactobacillus; Liquorilactobacillus capillatus

Average proteome isoelectric point is 7.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2051 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R1LY02|A0A0R1LY02_9LACO Ribonuclease BN OS=Lactobacillus capillatus DSM 19910 OX=1423731 GN=FC81_GL000042 PE=4 SV=1
MM1 pKa = 7.84TITPADD7 pKa = 3.24IKK9 pKa = 10.97ASLRR13 pKa = 11.84IDD15 pKa = 3.68VSDD18 pKa = 4.86DD19 pKa = 3.22DD20 pKa = 6.48AMIQQYY26 pKa = 10.14IDD28 pKa = 3.08SAANYY33 pKa = 8.84IQTAVSATEE42 pKa = 4.0EE43 pKa = 3.85QLNDD47 pKa = 3.22YY48 pKa = 8.68NQYY51 pKa = 8.81WFAVSLLTQFWYY63 pKa = 10.01QNRR66 pKa = 11.84AIDD69 pKa = 4.01MKK71 pKa = 9.08NTPYY75 pKa = 10.52QVVSMIQQLRR85 pKa = 11.84GLISS89 pKa = 3.21

Molecular weight: 10.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R1MCI9|A0A0R1MCI9_9LACO Phosphate acetyltransferase OS=Lactobacillus capillatus DSM 19910 OX=1423731 GN=FC81_GL000263 PE=3 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.69QPKK8 pKa = 8.59KK9 pKa = 7.38RR10 pKa = 11.84HH11 pKa = 5.81RR12 pKa = 11.84SRR14 pKa = 11.84VHH16 pKa = 6.12GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTSNGRR28 pKa = 11.84NVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.05GRR39 pKa = 11.84KK40 pKa = 8.7VLSAA44 pKa = 4.05

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2051

0

2051

627950

44

2025

306.2

34.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.85 ± 0.051

0.594 ± 0.013

5.094 ± 0.047

5.795 ± 0.066

4.414 ± 0.048

6.558 ± 0.048

1.952 ± 0.022

7.478 ± 0.052

7.406 ± 0.055

10.212 ± 0.07

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.506 ± 0.025

4.843 ± 0.051

3.323 ± 0.027

4.514 ± 0.05

4.021 ± 0.04

6.002 ± 0.064

6.025 ± 0.053

6.873 ± 0.042

0.933 ± 0.021

3.6 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski