Xylella phage Paz

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; unclassified Autographiviridae

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 51 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V5Q9M1|V5Q9M1_9CAUD Internal virion protein OS=Xylella phage Paz OX=1415145 GN=Paz_38 PE=4 SV=1
MM1 pKa = 7.06ATIAAKK7 pKa = 10.63LPFAPGTTVQLSAAVDD23 pKa = 3.91VYY25 pKa = 10.96PDD27 pKa = 3.33KK28 pKa = 11.43APAYY32 pKa = 8.22VCFYY36 pKa = 10.55QIVGTTLYY44 pKa = 10.49VQVRR48 pKa = 11.84VQDD51 pKa = 4.0DD52 pKa = 3.89SPEE55 pKa = 4.02VGTFDD60 pKa = 5.09LFIPVTGIEE69 pKa = 4.17ALGTPP74 pKa = 4.47

Molecular weight: 7.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V5Q7Q0|V5Q7Q0_9CAUD 3'-5' exonuclease OS=Xylella phage Paz OX=1415145 GN=Paz_21 PE=4 SV=1
MM1 pKa = 7.52NYY3 pKa = 10.21EE4 pKa = 4.19NLTQARR10 pKa = 11.84HH11 pKa = 3.88QAEE14 pKa = 3.92RR15 pKa = 11.84VLTHH19 pKa = 5.97ITLHH23 pKa = 5.67RR24 pKa = 11.84QAVRR28 pKa = 11.84HH29 pKa = 5.53GLVAKK34 pKa = 10.26PDD36 pKa = 3.3VSYY39 pKa = 11.02RR40 pKa = 11.84ALHH43 pKa = 6.05EE44 pKa = 4.02WAEE47 pKa = 4.21SLKK50 pKa = 10.76NIQSLVTVKK59 pKa = 10.19RR60 pKa = 11.84AARR63 pKa = 11.84TTVKK67 pKa = 10.68LLFNARR73 pKa = 11.84RR74 pKa = 11.84LWVGVHH80 pKa = 5.71YY81 pKa = 11.05SPANRR86 pKa = 11.84RR87 pKa = 11.84WCVNLLPGVTICITKK102 pKa = 10.54AGGVEE107 pKa = 4.03PP108 pKa = 4.81

Molecular weight: 12.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

51

0

51

13480

56

1363

264.3

29.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.601 ± 0.529

0.727 ± 0.122

6.194 ± 0.277

5.816 ± 0.263

3.509 ± 0.123

7.864 ± 0.351

1.929 ± 0.165

4.792 ± 0.264

5.312 ± 0.309

7.938 ± 0.244

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.234 ± 0.279

4.184 ± 0.173

4.006 ± 0.23

4.369 ± 0.353

6.053 ± 0.244

5.497 ± 0.294

5.846 ± 0.241

6.84 ± 0.339

1.699 ± 0.097

3.591 ± 0.228
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski