Tomato leaf curl Togo betasatellite-[Togo:2006]

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite

Average proteome isoelectric point is 4.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E5Q3H4|E5Q3H4_9VIRU BetaC1 OS=Tomato leaf curl Togo betasatellite-[Togo:2006] OX=929051 GN=BetaC1 PE=4 SV=1
MM1 pKa = 7.62TITYY5 pKa = 9.87KK6 pKa = 10.79NNRR9 pKa = 11.84GVTFKK14 pKa = 10.99INVYY18 pKa = 9.63LQEE21 pKa = 4.12ARR23 pKa = 11.84INCDD27 pKa = 2.61IQVTANKK34 pKa = 8.69EE35 pKa = 4.34AYY37 pKa = 10.26VSTSTYY43 pKa = 9.77NIPYY47 pKa = 9.69SFEE50 pKa = 3.83EE51 pKa = 4.27VIIPFDD57 pKa = 3.93FNGTEE62 pKa = 3.95EE63 pKa = 4.19QIANAIAQIFNGLHH77 pKa = 4.81YY78 pKa = 10.75RR79 pKa = 11.84EE80 pKa = 4.52MRR82 pKa = 11.84QEE84 pKa = 4.76DD85 pKa = 3.94IVEE88 pKa = 4.71AIDD91 pKa = 3.99MIMAEE96 pKa = 4.34NEE98 pKa = 4.13NVLGIQIIEE107 pKa = 3.96PHH109 pKa = 5.76RR110 pKa = 11.84VKK112 pKa = 10.72IKK114 pKa = 10.58ISVV117 pKa = 3.04

Molecular weight: 13.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E5Q3H4|E5Q3H4_9VIRU BetaC1 OS=Tomato leaf curl Togo betasatellite-[Togo:2006] OX=929051 GN=BetaC1 PE=4 SV=1
MM1 pKa = 7.62TITYY5 pKa = 9.87KK6 pKa = 10.79NNRR9 pKa = 11.84GVTFKK14 pKa = 10.99INVYY18 pKa = 9.63LQEE21 pKa = 4.12ARR23 pKa = 11.84INCDD27 pKa = 2.61IQVTANKK34 pKa = 8.69EE35 pKa = 4.34AYY37 pKa = 10.26VSTSTYY43 pKa = 9.77NIPYY47 pKa = 9.69SFEE50 pKa = 3.83EE51 pKa = 4.27VIIPFDD57 pKa = 3.93FNGTEE62 pKa = 3.95EE63 pKa = 4.19QIANAIAQIFNGLHH77 pKa = 4.81YY78 pKa = 10.75RR79 pKa = 11.84EE80 pKa = 4.52MRR82 pKa = 11.84QEE84 pKa = 4.76DD85 pKa = 3.94IVEE88 pKa = 4.71AIDD91 pKa = 3.99MIMAEE96 pKa = 4.34NEE98 pKa = 4.13NVLGIQIIEE107 pKa = 3.96PHH109 pKa = 5.76RR110 pKa = 11.84VKK112 pKa = 10.72IKK114 pKa = 10.58ISVV117 pKa = 3.04

Molecular weight: 13.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

117

117

117

117.0

13.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.838 ± 0.0

0.855 ± 0.0

3.419 ± 0.0

10.256 ± 0.0

4.274 ± 0.0

3.419 ± 0.0

1.709 ± 0.0

15.385 ± 0.0

4.274 ± 0.0

2.564 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.419 ± 0.0

9.402 ± 0.0

2.564 ± 0.0

5.128 ± 0.0

4.274 ± 0.0

3.419 ± 0.0

5.983 ± 0.0

7.692 ± 0.0

0.0 ± 0.0

5.128 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski