Xanthomonas phage XAJ24

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Pradovirus; Xanthomonas virus XAJ24

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 53 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I9L298|A0A1I9L298_9CAUD 5'-3' exonuclease OS=Xanthomonas phage XAJ24 OX=1775250 PE=4 SV=1
MM1 pKa = 6.64VTMPLEE7 pKa = 4.47EE8 pKa = 4.25YY9 pKa = 9.91TNLVAAKK16 pKa = 10.31DD17 pKa = 3.87EE18 pKa = 4.35LDD20 pKa = 3.79ALHH23 pKa = 7.13AAGVDD28 pKa = 3.14NWDD31 pKa = 3.79FYY33 pKa = 12.1YY34 pKa = 10.91DD35 pKa = 3.64ALRR38 pKa = 11.84DD39 pKa = 3.74AGLGDD44 pKa = 3.51NDD46 pKa = 4.29EE47 pKa = 4.42EE48 pKa = 4.38EE49 pKa = 4.83EE50 pKa = 4.41YY51 pKa = 11.42

Molecular weight: 5.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I9L282|A0A1I9L282_9CAUD Uncharacterized protein OS=Xanthomonas phage XAJ24 OX=1775250 PE=4 SV=1
MM1 pKa = 7.54HH2 pKa = 7.41GNANLEE8 pKa = 3.93RR9 pKa = 11.84TRR11 pKa = 11.84TKK13 pKa = 10.69RR14 pKa = 11.84RR15 pKa = 11.84FCQFTKK21 pKa = 9.13TASVIDD27 pKa = 4.05MTTTEE32 pKa = 4.03YY33 pKa = 11.24DD34 pKa = 3.1RR35 pKa = 11.84NLAEE39 pKa = 4.59RR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84QAEE45 pKa = 4.14RR46 pKa = 11.84YY47 pKa = 6.43EE48 pKa = 4.12ARR50 pKa = 11.84HH51 pKa = 4.56GTGGKK56 pKa = 9.14RR57 pKa = 11.84AVFGVEE63 pKa = 4.34GNSGTARR70 pKa = 11.84ANHH73 pKa = 5.84AADD76 pKa = 3.5RR77 pKa = 11.84RR78 pKa = 11.84AYY80 pKa = 10.44LL81 pKa = 3.71

Molecular weight: 9.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

53

0

53

13764

37

1634

259.7

28.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.6 ± 0.652

0.857 ± 0.146

6.008 ± 0.175

5.863 ± 0.245

3.197 ± 0.155

8.515 ± 0.372

1.874 ± 0.155

4.483 ± 0.171

5.028 ± 0.335

7.905 ± 0.21

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.732 ± 0.192

4.199 ± 0.176

4.105 ± 0.242

4.432 ± 0.238

5.936 ± 0.283

5.979 ± 0.258

6.386 ± 0.313

6.917 ± 0.312

1.627 ± 0.119

3.357 ± 0.212
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski