Amino acid dipepetide frequency for Bhendi yellow vein India virus [India:Dharwad OYDWR2:2006]

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.85AlaAla: 4.85 ± 1.723
1.617AlaCys: 1.617 ± 0.697
0.808AlaAsp: 0.808 ± 0.746
0.808AlaGlu: 0.808 ± 0.667
0.0AlaPhe: 0.0 ± 0.0
2.425AlaGly: 2.425 ± 0.891
3.234AlaHis: 3.234 ± 1.465
0.808AlaIle: 0.808 ± 0.667
2.425AlaLys: 2.425 ± 1.171
5.659AlaLeu: 5.659 ± 2.085
0.808AlaMet: 0.808 ± 0.958
0.808AlaAsn: 0.808 ± 0.667
2.425AlaPro: 2.425 ± 1.142
3.234AlaGln: 3.234 ± 1.429
2.425AlaArg: 2.425 ± 1.431
4.85AlaSer: 4.85 ± 2.542
4.042AlaThr: 4.042 ± 1.923
0.808AlaVal: 0.808 ± 0.811
1.617AlaTrp: 1.617 ± 0.697
1.617AlaTyr: 1.617 ± 1.004
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
1.617CysCys: 1.617 ± 1.849
0.0CysAsp: 0.0 ± 0.0
1.617CysGlu: 1.617 ± 0.697
0.808CysPhe: 0.808 ± 0.811
1.617CysGly: 1.617 ± 0.941
0.808CysHis: 0.808 ± 0.828
3.234CysIle: 3.234 ± 2.135
0.808CysLys: 0.808 ± 0.746
0.808CysLeu: 0.808 ± 0.921
1.617CysMet: 1.617 ± 1.288
1.617CysAsn: 1.617 ± 0.941
1.617CysPro: 1.617 ± 1.849
0.808CysGln: 0.808 ± 0.667
3.234CysArg: 3.234 ± 1.431
3.234CysSer: 3.234 ± 1.626
0.808CysThr: 0.808 ± 0.746
1.617CysVal: 1.617 ± 1.132
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.425AspAla: 2.425 ± 2.0
0.0AspCys: 0.0 ± 0.0
1.617AspAsp: 1.617 ± 0.941
2.425AspGlu: 2.425 ± 0.869
1.617AspPhe: 1.617 ± 0.697
2.425AspGly: 2.425 ± 2.0
0.808AspHis: 0.808 ± 0.667
3.234AspIle: 3.234 ± 1.428
3.234AspLys: 3.234 ± 1.161
4.85AspLeu: 4.85 ± 2.136
0.808AspMet: 0.808 ± 0.746
1.617AspAsn: 1.617 ± 0.95
2.425AspPro: 2.425 ± 1.068
2.425AspGln: 2.425 ± 1.259
2.425AspArg: 2.425 ± 1.281
3.234AspSer: 3.234 ± 1.059
1.617AspThr: 1.617 ± 1.849
4.85AspVal: 4.85 ± 1.956
1.617AspTrp: 1.617 ± 0.941
0.808AspTyr: 0.808 ± 0.925
0.0AspXaa: 0.0 ± 0.0
Glu
4.042GluAla: 4.042 ± 1.115
0.808GluCys: 0.808 ± 0.828
4.042GluAsp: 4.042 ± 1.899
5.659GluGlu: 5.659 ± 3.801
3.234GluPhe: 3.234 ± 1.432
2.425GluGly: 2.425 ± 0.869
1.617GluHis: 1.617 ± 1.143
0.0GluIle: 0.0 ± 0.0
1.617GluLys: 1.617 ± 1.334
3.234GluLeu: 3.234 ± 1.432
0.0GluMet: 0.0 ± 0.0
3.234GluAsn: 3.234 ± 1.978
0.808GluPro: 0.808 ± 0.667
1.617GluGln: 1.617 ± 1.168
1.617GluArg: 1.617 ± 1.217
4.042GluSer: 4.042 ± 1.083
2.425GluThr: 2.425 ± 1.194
1.617GluVal: 1.617 ± 1.132
1.617GluTrp: 1.617 ± 0.941
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
0.0PheAla: 0.0 ± 0.0
0.808PheCys: 0.808 ± 0.746
2.425PheAsp: 2.425 ± 1.142
1.617PheGlu: 1.617 ± 0.697
0.808PhePhe: 0.808 ± 0.667
1.617PheGly: 1.617 ± 1.493
1.617PheHis: 1.617 ± 1.334
2.425PheIle: 2.425 ± 0.937
3.234PheLys: 3.234 ± 2.384
8.892PheLeu: 8.892 ± 3.135
0.808PheMet: 0.808 ± 0.667
2.425PheAsn: 2.425 ± 1.175
1.617PhePro: 1.617 ± 1.288
4.042PheGln: 4.042 ± 2.612
2.425PheArg: 2.425 ± 1.529
4.85PheSer: 4.85 ± 2.352
1.617PheThr: 1.617 ± 1.217
0.808PheVal: 0.808 ± 0.667
0.0PheTrp: 0.0 ± 0.0
1.617PheTyr: 1.617 ± 1.168
0.0PheXaa: 0.0 ± 0.0
Gly
1.617GlyAla: 1.617 ± 1.334
4.042GlyCys: 4.042 ± 1.029
0.808GlyAsp: 0.808 ± 0.667
1.617GlyGlu: 1.617 ± 0.95
1.617GlyPhe: 1.617 ± 1.11
3.234GlyGly: 3.234 ± 1.138
1.617GlyHis: 1.617 ± 1.133
2.425GlyIle: 2.425 ± 1.171
5.659GlyLys: 5.659 ± 2.594
3.234GlyLeu: 3.234 ± 2.034
1.617GlyMet: 1.617 ± 1.849
1.617GlyAsn: 1.617 ± 1.334
3.234GlyPro: 3.234 ± 1.093
1.617GlyGln: 1.617 ± 1.132
0.808GlyArg: 0.808 ± 0.667
4.042GlySer: 4.042 ± 1.651
3.234GlyThr: 3.234 ± 1.275
4.85GlyVal: 4.85 ± 2.259
0.0GlyTrp: 0.0 ± 0.0
0.808GlyTyr: 0.808 ± 0.925
0.0GlyXaa: 0.0 ± 0.0
His
1.617HisAla: 1.617 ± 1.493
1.617HisCys: 1.617 ± 1.11
2.425HisAsp: 2.425 ± 1.175
1.617HisGlu: 1.617 ± 1.334
4.042HisPhe: 4.042 ± 1.891
3.234HisGly: 3.234 ± 1.626
2.425HisHis: 2.425 ± 1.757
4.042HisIle: 4.042 ± 2.989
1.617HisLys: 1.617 ± 1.138
1.617HisLeu: 1.617 ± 0.944
1.617HisMet: 1.617 ± 1.26
3.234HisAsn: 3.234 ± 1.882
2.425HisPro: 2.425 ± 1.14
1.617HisGln: 1.617 ± 1.288
3.234HisArg: 3.234 ± 1.749
1.617HisSer: 1.617 ± 1.143
1.617HisThr: 1.617 ± 1.493
1.617HisVal: 1.617 ± 1.217
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
0.0IleAla: 0.0 ± 0.0
2.425IleCys: 2.425 ± 1.187
1.617IleAsp: 1.617 ± 0.972
0.808IleGlu: 0.808 ± 0.667
0.808IlePhe: 0.808 ± 0.667
2.425IleGly: 2.425 ± 1.723
1.617IleHis: 1.617 ± 1.11
1.617IleIle: 1.617 ± 1.217
6.467IleLys: 6.467 ± 2.757
7.276IleLeu: 7.276 ± 3.545
0.808IleMet: 0.808 ± 0.958
2.425IleAsn: 2.425 ± 1.132
1.617IlePro: 1.617 ± 0.944
4.85IleGln: 4.85 ± 2.565
4.85IleArg: 4.85 ± 1.579
3.234IleSer: 3.234 ± 1.732
2.425IleThr: 2.425 ± 1.851
3.234IleVal: 3.234 ± 1.407
2.425IleTrp: 2.425 ± 1.6
2.425IleTyr: 2.425 ± 0.891
0.0IleXaa: 0.0 ± 0.0
Lys
4.042LysAla: 4.042 ± 2.001
1.617LysCys: 1.617 ± 0.936
0.808LysAsp: 0.808 ± 0.667
4.85LysGlu: 4.85 ± 2.16
2.425LysPhe: 2.425 ± 1.142
3.234LysGly: 3.234 ± 1.148
3.234LysHis: 3.234 ± 2.622
3.234LysIle: 3.234 ± 1.725
1.617LysLys: 1.617 ± 0.697
4.042LysLeu: 4.042 ± 2.837
0.0LysMet: 0.0 ± 0.0
4.042LysAsn: 4.042 ± 1.771
3.234LysPro: 3.234 ± 1.325
1.617LysGln: 1.617 ± 1.168
4.042LysArg: 4.042 ± 1.791
4.85LysSer: 4.85 ± 1.018
4.042LysThr: 4.042 ± 1.156
4.85LysVal: 4.85 ± 1.816
0.808LysTrp: 0.808 ± 0.746
3.234LysTyr: 3.234 ± 0.95
0.0LysXaa: 0.0 ± 0.0
Leu
0.0LeuAla: 0.0 ± 0.0
1.617LeuCys: 1.617 ± 1.334
4.042LeuAsp: 4.042 ± 2.612
2.425LeuGlu: 2.425 ± 1.642
2.425LeuPhe: 2.425 ± 1.371
5.659LeuGly: 5.659 ± 2.684
1.617LeuHis: 1.617 ± 0.936
3.234LeuIle: 3.234 ± 1.902
6.467LeuLys: 6.467 ± 1.95
4.85LeuLeu: 4.85 ± 3.072
0.808LeuMet: 0.808 ± 0.746
8.084LeuAsn: 8.084 ± 2.594
1.617LeuPro: 1.617 ± 1.26
4.042LeuGln: 4.042 ± 1.387
7.276LeuArg: 7.276 ± 1.934
6.467LeuSer: 6.467 ± 2.277
8.892LeuThr: 8.892 ± 1.948
6.467LeuVal: 6.467 ± 4.775
0.808LeuTrp: 0.808 ± 0.921
4.85LeuTyr: 4.85 ± 2.225
0.0LeuXaa: 0.0 ± 0.0
Met
1.617MetAla: 1.617 ± 1.493
0.808MetCys: 0.808 ± 0.746
3.234MetAsp: 3.234 ± 1.713
2.425MetGlu: 2.425 ± 1.812
0.808MetPhe: 0.808 ± 0.746
2.425MetGly: 2.425 ± 1.205
1.617MetHis: 1.617 ± 1.162
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
1.617MetLeu: 1.617 ± 1.168
0.808MetMet: 0.808 ± 0.853
0.808MetAsn: 0.808 ± 0.746
3.234MetPro: 3.234 ± 1.116
0.808MetGln: 0.808 ± 0.828
1.617MetArg: 1.617 ± 1.143
1.617MetSer: 1.617 ± 1.132
0.0MetThr: 0.0 ± 0.0
0.808MetVal: 0.808 ± 0.921
1.617MetTrp: 1.617 ± 1.004
2.425MetTyr: 2.425 ± 1.504
0.0MetXaa: 0.0 ± 0.0
Asn
3.234AsnAla: 3.234 ± 1.735
0.808AsnCys: 0.808 ± 0.828
1.617AsnAsp: 1.617 ± 1.334
3.234AsnGlu: 3.234 ± 1.812
0.808AsnPhe: 0.808 ± 0.746
2.425AsnGly: 2.425 ± 2.0
2.425AsnHis: 2.425 ± 1.603
3.234AsnIle: 3.234 ± 1.138
0.808AsnLys: 0.808 ± 0.667
8.084AsnLeu: 8.084 ± 3.639
3.234AsnMet: 3.234 ± 2.123
4.042AsnAsn: 4.042 ± 0.978
5.659AsnPro: 5.659 ± 1.419
4.042AsnGln: 4.042 ± 1.327
4.042AsnArg: 4.042 ± 1.229
2.425AsnSer: 2.425 ± 1.142
0.808AsnThr: 0.808 ± 0.667
4.042AsnVal: 4.042 ± 1.419
0.0AsnTrp: 0.0 ± 0.0
4.042AsnTyr: 4.042 ± 1.097
0.0AsnXaa: 0.0 ± 0.0
Pro
2.425ProAla: 2.425 ± 1.0
1.617ProCys: 1.617 ± 1.168
4.85ProAsp: 4.85 ± 3.2
0.808ProGlu: 0.808 ± 0.667
3.234ProPhe: 3.234 ± 0.986
0.808ProGly: 0.808 ± 0.667
3.234ProHis: 3.234 ± 1.995
4.042ProIle: 4.042 ± 1.842
2.425ProLys: 2.425 ± 1.365
4.042ProLeu: 4.042 ± 1.375
2.425ProMet: 2.425 ± 0.956
4.042ProAsn: 4.042 ± 1.918
1.617ProPro: 1.617 ± 0.972
4.85ProGln: 4.85 ± 1.23
4.85ProArg: 4.85 ± 1.384
4.042ProSer: 4.042 ± 2.516
4.85ProThr: 4.85 ± 1.707
3.234ProVal: 3.234 ± 1.153
0.0ProTrp: 0.0 ± 0.0
2.425ProTyr: 2.425 ± 0.937
0.0ProXaa: 0.0 ± 0.0
Gln
4.042GlnAla: 4.042 ± 1.463
1.617GlnCys: 1.617 ± 0.944
1.617GlnAsp: 1.617 ± 1.168
3.234GlnGlu: 3.234 ± 1.108
3.234GlnPhe: 3.234 ± 1.996
2.425GlnGly: 2.425 ± 1.365
3.234GlnHis: 3.234 ± 2.008
1.617GlnIle: 1.617 ± 1.334
0.808GlnLys: 0.808 ± 0.925
3.234GlnLeu: 3.234 ± 2.17
0.0GlnMet: 0.0 ± 0.0
2.425GlnAsn: 2.425 ± 1.726
5.659GlnPro: 5.659 ± 2.51
2.425GlnGln: 2.425 ± 1.603
2.425GlnArg: 2.425 ± 1.04
4.85GlnSer: 4.85 ± 1.5
4.042GlnThr: 4.042 ± 2.298
4.85GlnVal: 4.85 ± 1.596
0.0GlnTrp: 0.0 ± 0.0
1.617GlnTyr: 1.617 ± 0.95
0.0GlnXaa: 0.0 ± 0.0
Arg
2.425ArgAla: 2.425 ± 1.603
2.425ArgCys: 2.425 ± 1.336
4.042ArgAsp: 4.042 ± 1.455
2.425ArgGlu: 2.425 ± 1.171
2.425ArgPhe: 2.425 ± 1.142
2.425ArgGly: 2.425 ± 1.603
3.234ArgHis: 3.234 ± 2.141
5.659ArgIle: 5.659 ± 2.295
4.85ArgLys: 4.85 ± 2.193
2.425ArgLeu: 2.425 ± 1.27
2.425ArgMet: 2.425 ± 1.723
1.617ArgAsn: 1.617 ± 1.004
4.85ArgPro: 4.85 ± 1.196
2.425ArgGln: 2.425 ± 1.433
2.425ArgArg: 2.425 ± 2.239
5.659ArgSer: 5.659 ± 1.306
1.617ArgThr: 1.617 ± 0.972
4.85ArgVal: 4.85 ± 1.205
0.0ArgTrp: 0.0 ± 0.0
2.425ArgTyr: 2.425 ± 1.0
0.0ArgXaa: 0.0 ± 0.0
Ser
4.85SerAla: 4.85 ± 2.461
1.617SerCys: 1.617 ± 1.288
3.234SerAsp: 3.234 ± 0.916
1.617SerGlu: 1.617 ± 1.004
3.234SerPhe: 3.234 ± 1.548
3.234SerGly: 3.234 ± 1.392
1.617SerHis: 1.617 ± 1.217
5.659SerIle: 5.659 ± 2.904
8.892SerLys: 8.892 ± 2.411
4.85SerLeu: 4.85 ± 1.939
0.808SerMet: 0.808 ± 0.958
4.85SerAsn: 4.85 ± 1.46
8.084SerPro: 8.084 ± 1.744
3.234SerGln: 3.234 ± 1.626
4.85SerArg: 4.85 ± 1.205
12.935SerSer: 12.935 ± 5.793
5.659SerThr: 5.659 ± 1.87
3.234SerVal: 3.234 ± 2.393
0.808SerTrp: 0.808 ± 0.667
1.617SerTyr: 1.617 ± 0.941
0.0SerXaa: 0.0 ± 0.0
Thr
1.617ThrAla: 1.617 ± 0.936
0.808ThrCys: 0.808 ± 0.958
0.808ThrAsp: 0.808 ± 0.746
2.425ThrGlu: 2.425 ± 1.334
2.425ThrPhe: 2.425 ± 1.259
4.042ThrGly: 4.042 ± 1.097
3.234ThrHis: 3.234 ± 1.757
1.617ThrIle: 1.617 ± 0.972
4.042ThrLys: 4.042 ± 1.371
2.425ThrLeu: 2.425 ± 1.221
3.234ThrMet: 3.234 ± 1.755
5.659ThrAsn: 5.659 ± 2.109
4.042ThrPro: 4.042 ± 1.515
4.042ThrGln: 4.042 ± 1.499
1.617ThrArg: 1.617 ± 0.697
5.659ThrSer: 5.659 ± 2.2
4.042ThrThr: 4.042 ± 2.261
2.425ThrVal: 2.425 ± 1.729
0.808ThrTrp: 0.808 ± 0.958
1.617ThrTyr: 1.617 ± 1.334
0.0ThrXaa: 0.0 ± 0.0
Val
0.808ValAla: 0.808 ± 0.958
0.0ValCys: 0.0 ± 0.0
4.042ValAsp: 4.042 ± 1.975
2.425ValGlu: 2.425 ± 1.908
5.659ValPhe: 5.659 ± 1.759
0.808ValGly: 0.808 ± 0.746
3.234ValHis: 3.234 ± 1.488
6.467ValIle: 6.467 ± 2.541
3.234ValLys: 3.234 ± 2.393
5.659ValLeu: 5.659 ± 2.734
1.617ValMet: 1.617 ± 1.493
3.234ValAsn: 3.234 ± 1.723
4.85ValPro: 4.85 ± 0.948
4.042ValGln: 4.042 ± 1.115
2.425ValArg: 2.425 ± 2.239
2.425ValSer: 2.425 ± 1.405
3.234ValThr: 3.234 ± 2.986
3.234ValVal: 3.234 ± 1.407
0.0ValTrp: 0.0 ± 0.0
4.042ValTyr: 4.042 ± 1.846
0.0ValXaa: 0.0 ± 0.0
Trp
2.425TrpAla: 2.425 ± 2.0
0.0TrpCys: 0.0 ± 0.0
0.808TrpAsp: 0.808 ± 0.925
0.0TrpGlu: 0.0 ± 0.0
0.808TrpPhe: 0.808 ± 0.921
0.0TrpGly: 0.0 ± 0.0
0.808TrpHis: 0.808 ± 0.746
0.0TrpIle: 0.0 ± 0.0
0.808TrpLys: 0.808 ± 0.811
0.0TrpLeu: 0.0 ± 0.0
0.808TrpMet: 0.808 ± 0.746
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.808TrpGln: 0.808 ± 0.667
1.617TrpArg: 1.617 ± 1.26
0.808TrpSer: 0.808 ± 0.828
1.617TrpThr: 1.617 ± 0.95
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.808TrpTyr: 0.808 ± 0.667
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.234TyrAla: 3.234 ± 1.452
0.0TyrCys: 0.0 ± 0.0
1.617TyrAsp: 1.617 ± 1.168
1.617TyrGlu: 1.617 ± 1.168
3.234TyrPhe: 3.234 ± 1.095
0.808TyrGly: 0.808 ± 0.667
0.0TyrHis: 0.0 ± 0.0
0.808TyrIle: 0.808 ± 0.811
0.808TyrLys: 0.808 ± 0.667
4.85TyrLeu: 4.85 ± 1.631
3.234TyrMet: 3.234 ± 0.887
3.234TyrAsn: 3.234 ± 1.428
0.808TyrPro: 0.808 ± 0.667
0.808TyrGln: 0.808 ± 0.746
2.425TyrArg: 2.425 ± 1.729
4.042TyrSer: 4.042 ± 1.935
0.808TyrThr: 0.808 ± 0.746
4.042TyrVal: 4.042 ± 1.303
0.0TyrTrp: 0.0 ± 0.0
0.808TyrTyr: 0.808 ± 0.828
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (1238 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski