Gammapapillomavirus 16

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2AM05|A0A2D2AM05_9PAPI Minor capsid protein L2 OS=Gammapapillomavirus 16 OX=1513261 GN=L2 PE=3 SV=1
MM1 pKa = 7.35QGRR4 pKa = 11.84KK5 pKa = 5.03RR6 pKa = 11.84TKK8 pKa = 8.65RR9 pKa = 11.84ASVEE13 pKa = 3.94DD14 pKa = 4.57IYY16 pKa = 11.72AKK18 pKa = 10.8GCTQPGGYY26 pKa = 9.78CPPDD30 pKa = 3.29VKK32 pKa = 11.21NKK34 pKa = 10.1VEE36 pKa = 4.13GNTWADD42 pKa = 3.44WILKK46 pKa = 9.19VFGSVVYY53 pKa = 10.04FGGLGIGTGKK63 pKa = 8.78GTGGSTGYY71 pKa = 8.91TPLGGVGGSRR81 pKa = 11.84GPTTSIRR88 pKa = 11.84PTVPIEE94 pKa = 4.26TIGLPDD100 pKa = 3.67IVTVNPVEE108 pKa = 4.56PGASSIVPLAEE119 pKa = 4.28GLPEE123 pKa = 3.99PAVIDD128 pKa = 3.72TGSSIPGLAADD139 pKa = 4.11NTNITTVIDD148 pKa = 3.86PLSEE152 pKa = 3.98VTGLGEE158 pKa = 4.13HH159 pKa = 7.12PNLIGATSEE168 pKa = 4.04DD169 pKa = 3.97TVAVLDD175 pKa = 4.31VQTSPPPAKK184 pKa = 10.25KK185 pKa = 9.97ILLDD189 pKa = 3.56TSLTDD194 pKa = 3.01TTFRR198 pKa = 11.84VDD200 pKa = 2.89THH202 pKa = 6.75ASHH205 pKa = 7.36VDD207 pKa = 2.95ANLNIFVDD215 pKa = 3.95AQSFGSHH222 pKa = 6.29IGLSEE227 pKa = 5.26AIPLQEE233 pKa = 4.28INLISEE239 pKa = 4.42FEE241 pKa = 4.02IEE243 pKa = 4.27EE244 pKa = 5.1PIPSTSTPIAEE255 pKa = 4.04RR256 pKa = 11.84VVTRR260 pKa = 11.84AKK262 pKa = 10.21QLYY265 pKa = 8.21NRR267 pKa = 11.84YY268 pKa = 8.13VQQVPTRR275 pKa = 11.84PAEE278 pKa = 3.8FATYY282 pKa = 10.17SSRR285 pKa = 11.84FEE287 pKa = 4.22FEE289 pKa = 4.26NPAFMKK295 pKa = 10.57DD296 pKa = 3.18VTLEE300 pKa = 3.98FEE302 pKa = 4.17NDD304 pKa = 3.18LAEE307 pKa = 4.54IEE309 pKa = 4.83QITAPAISDD318 pKa = 3.35VRR320 pKa = 11.84ILNRR324 pKa = 11.84PTFSEE329 pKa = 4.27TTDD332 pKa = 3.06RR333 pKa = 11.84TVRR336 pKa = 11.84ISRR339 pKa = 11.84LGQRR343 pKa = 11.84AGMKK347 pKa = 8.73TRR349 pKa = 11.84SGLDD353 pKa = 2.89VGQRR357 pKa = 11.84VHH359 pKa = 7.29FYY361 pKa = 10.68YY362 pKa = 10.56DD363 pKa = 3.16VSKK366 pKa = 10.71ISSTIEE372 pKa = 3.5MNTFGEE378 pKa = 4.53YY379 pKa = 9.55SHH381 pKa = 7.06EE382 pKa = 4.1STIVDD387 pKa = 3.77EE388 pKa = 4.8LLSSSFINPFEE399 pKa = 4.14MPIEE403 pKa = 5.08DD404 pKa = 3.64IFSDD408 pKa = 3.95TEE410 pKa = 4.57LIDD413 pKa = 3.97PLEE416 pKa = 4.03EE417 pKa = 4.26DD418 pKa = 4.15FRR420 pKa = 11.84NSHH423 pKa = 7.21LILPFSDD430 pKa = 3.98DD431 pKa = 3.13QDD433 pKa = 4.14VYY435 pKa = 11.64ALPTLPPGIGLKK447 pKa = 10.5LYY449 pKa = 10.32TDD451 pKa = 3.98LTEE454 pKa = 4.71KK455 pKa = 10.85DD456 pKa = 4.06LFIHH460 pKa = 6.98HH461 pKa = 6.98PTQNTQIIVPDD472 pKa = 3.6SPYY475 pKa = 10.53IPLQPPIGAVIDD487 pKa = 3.6NDD489 pKa = 4.29DD490 pKa = 4.21YY491 pKa = 11.81YY492 pKa = 11.67LHH494 pKa = 7.46PSLLTRR500 pKa = 11.84KK501 pKa = 9.71RR502 pKa = 11.84KK503 pKa = 9.33RR504 pKa = 11.84AFFF507 pKa = 4.42

Molecular weight: 55.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2ALU7|A0A2D2ALU7_9PAPI Protein E7 OS=Gammapapillomavirus 16 OX=1513261 GN=E7 PE=3 SV=1
MM1 pKa = 7.6EE2 pKa = 5.86PLFPTKK8 pKa = 10.52LNEE11 pKa = 3.72YY12 pKa = 9.87CSYY15 pKa = 11.32FDD17 pKa = 4.62ISFFDD22 pKa = 4.64LSLKK26 pKa = 10.8CIFCKK31 pKa = 10.37HH32 pKa = 5.4YY33 pKa = 11.28LNLVDD38 pKa = 5.35LAYY41 pKa = 10.0FYY43 pKa = 11.23EE44 pKa = 5.27KK45 pKa = 10.7GLSLVWRR52 pKa = 11.84NNICYY57 pKa = 9.82ACCDD61 pKa = 3.41RR62 pKa = 11.84CLKK65 pKa = 10.72CSARR69 pKa = 11.84YY70 pKa = 7.05EE71 pKa = 4.36ANRR74 pKa = 11.84HH75 pKa = 4.58FQCTFNTATLHH86 pKa = 6.64AVLEE90 pKa = 4.54KK91 pKa = 10.1PLQDD95 pKa = 3.29IEE97 pKa = 4.14IRR99 pKa = 11.84CYY101 pKa = 10.45YY102 pKa = 9.24CLCILSLVEE111 pKa = 4.08KK112 pKa = 10.13CDD114 pKa = 4.3LIARR118 pKa = 11.84GRR120 pKa = 11.84PTCLVRR126 pKa = 11.84GYY128 pKa = 10.43FRR130 pKa = 11.84APCKK134 pKa = 10.39DD135 pKa = 3.55CIRR138 pKa = 11.84RR139 pKa = 11.84EE140 pKa = 3.95IYY142 pKa = 10.51

Molecular weight: 16.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2395

99

610

342.1

38.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.887 ± 0.251

2.38 ± 0.882

6.221 ± 0.586

6.681 ± 0.726

4.301 ± 0.548

5.261 ± 0.747

2.296 ± 0.239

5.428 ± 1.025

5.219 ± 0.679

9.812 ± 0.657

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.837 ± 0.361

5.762 ± 0.647

5.846 ± 1.012

3.967 ± 0.38

5.386 ± 0.823

7.307 ± 0.607

6.472 ± 0.784

5.01 ± 0.644

1.211 ± 0.296

3.716 ± 0.522
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski