Chondromyces crocatus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8327 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K1EH87|A0A0K1EH87_CHOCO Uncharacterized protein OS=Chondromyces crocatus OX=52 GN=CMC5_041110 PE=4 SV=1
MM1 pKa = 7.42SRR3 pKa = 11.84FALKK7 pKa = 9.58MLGIAGVFGVFAACSATKK25 pKa = 10.67GGDD28 pKa = 3.23NSFGGSEE35 pKa = 4.28TTSSDD40 pKa = 2.92GTSQGGHH47 pKa = 5.99GAAGGDD53 pKa = 3.59SGEE56 pKa = 4.15GGIAIEE62 pKa = 4.41TGSGGGGSQPPCIDD76 pKa = 3.46TPGVDD81 pKa = 4.23DD82 pKa = 6.07DD83 pKa = 5.35GDD85 pKa = 3.86GFADD89 pKa = 4.79PEE91 pKa = 4.57DD92 pKa = 5.83CNDD95 pKa = 3.95CDD97 pKa = 4.74PNVNPAAMEE106 pKa = 4.04VMTAEE111 pKa = 4.4GADD114 pKa = 4.1PVDD117 pKa = 4.05EE118 pKa = 5.27DD119 pKa = 5.3CDD121 pKa = 4.57GEE123 pKa = 4.14IDD125 pKa = 4.89NIAGTCDD132 pKa = 3.21EE133 pKa = 4.6NLLVEE138 pKa = 5.5DD139 pKa = 5.51PDD141 pKa = 3.78PMSAVRR147 pKa = 11.84ALDD150 pKa = 3.0ICRR153 pKa = 11.84NAQGPRR159 pKa = 11.84DD160 pKa = 3.68WGLLGAAWVRR170 pKa = 11.84ANGTPLTAPTNQYY183 pKa = 10.67GIQPNFGPNVSPRR196 pKa = 11.84GGDD199 pKa = 2.9RR200 pKa = 11.84MLAISSGRR208 pKa = 11.84ARR210 pKa = 11.84LPGQTGACTTEE221 pKa = 3.87SCNGHH226 pKa = 6.26GLGTAPSGFPQSVTGCPVGSSINDD250 pKa = 3.42DD251 pKa = 3.37VGLQVHH257 pKa = 5.89MRR259 pKa = 11.84APSNATGLRR268 pKa = 11.84FNFRR272 pKa = 11.84FYY274 pKa = 11.01SFEE277 pKa = 4.0YY278 pKa = 10.44PEE280 pKa = 4.67FVCMSYY286 pKa = 11.26NDD288 pKa = 3.49QFIALMNPAPAGAANGNISFDD309 pKa = 3.58SMGNPVSVNVAFFDD323 pKa = 3.85VCEE326 pKa = 4.28GCPLGIADD334 pKa = 5.23LLGTGFDD341 pKa = 3.79TLDD344 pKa = 3.75DD345 pKa = 4.4AGATGWLATTAPVKK359 pKa = 10.56GGQEE363 pKa = 3.64VSLRR367 pKa = 11.84FAIWDD372 pKa = 3.93TGDD375 pKa = 3.22QQYY378 pKa = 11.6DD379 pKa = 3.49STALIDD385 pKa = 3.68NFEE388 pKa = 4.61WIATGGTVPVGTTPEE403 pKa = 4.06PQQ405 pKa = 2.9

Molecular weight: 41.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K1EEQ1|A0A0K1EEQ1_CHOCO Uncharacterized protein OS=Chondromyces crocatus OX=52 GN=CMC5_034760 PE=4 SV=1
MM1 pKa = 7.77LSGQFPVTRR10 pKa = 11.84SQFPVTRR17 pKa = 11.84SQFPVTRR24 pKa = 11.84SQFPVTRR31 pKa = 11.84SQFPVTRR38 pKa = 11.84SQFPVTRR45 pKa = 11.84SQFPVTRR52 pKa = 11.84SQFPVLSGQFPVTRR66 pKa = 11.84SQFPVVV72 pKa = 3.29

Molecular weight: 8.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8327

0

8327

3359666

29

8158

403.5

43.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.72 ± 0.042

1.172 ± 0.018

5.547 ± 0.022

6.272 ± 0.028

3.042 ± 0.013

9.166 ± 0.042

2.201 ± 0.013

3.582 ± 0.018

2.389 ± 0.024

10.389 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.802 ± 0.012

1.9 ± 0.018

6.444 ± 0.026

3.083 ± 0.015

8.112 ± 0.032

5.899 ± 0.021

5.464 ± 0.023

7.645 ± 0.024

1.293 ± 0.009

1.879 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski