Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) (Yeast) (Candida colliculosa)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Torulaspora; Torulaspora delbrueckii

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4966 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G8ZTG6|G8ZTG6_TORDC UBC core domain-containing protein OS=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) OX=1076872 GN=TDEL0D03260 PE=3 SV=1
MM1 pKa = 7.36NPITVLFHH9 pKa = 6.81LALAYY14 pKa = 9.72TSFTGIDD21 pKa = 3.57LADD24 pKa = 3.81ASAVDD29 pKa = 3.89VEE31 pKa = 4.77VVTDD35 pKa = 3.7QVSKK39 pKa = 9.98VTIDD43 pKa = 3.65LNQLMDD49 pKa = 3.56QAGTNSEE56 pKa = 4.27SSDD59 pKa = 3.13ASAKK63 pKa = 9.0VLSYY67 pKa = 10.46IVNSDD72 pKa = 3.61SPVNSVVEE80 pKa = 4.6AYY82 pKa = 9.89DD83 pKa = 3.52AAIDD87 pKa = 4.14AGDD90 pKa = 3.41ISLATVYY97 pKa = 8.87ATKK100 pKa = 10.86LMGLIEE106 pKa = 4.49SVDD109 pKa = 3.78DD110 pKa = 4.92LISDD114 pKa = 4.19IYY116 pKa = 10.9AAPDD120 pKa = 3.7YY121 pKa = 10.43YY122 pKa = 11.42SEE124 pKa = 5.32IIPKK128 pKa = 9.71QLITGAASQLAKK140 pKa = 10.07RR141 pKa = 11.84DD142 pKa = 3.69QVDD145 pKa = 3.23NDD147 pKa = 3.23ATRR150 pKa = 11.84VLDD153 pKa = 3.89ALLNIMGTNATAQSNQLDD171 pKa = 4.16DD172 pKa = 3.88GTTGLVRR179 pKa = 11.84RR180 pKa = 11.84DD181 pKa = 2.98QCGNYY186 pKa = 10.01NVDD189 pKa = 3.25TSNVVALSVFNSMRR203 pKa = 11.84GQIDD207 pKa = 3.61GNMWYY212 pKa = 9.78PNDD215 pKa = 3.54PRR217 pKa = 11.84NFCRR221 pKa = 11.84WYY223 pKa = 9.92EE224 pKa = 3.94DD225 pKa = 3.54LRR227 pKa = 11.84GCISWSTDD235 pKa = 3.04VGGMPGNALQSWAADD250 pKa = 3.5MSNCIPDD257 pKa = 3.83AHH259 pKa = 6.5PKK261 pKa = 9.59SLKK264 pKa = 10.34SLFAFGVSQGSTYY277 pKa = 10.66VCGSGRR283 pKa = 11.84PDD285 pKa = 2.95GCC287 pKa = 4.42

Molecular weight: 30.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G8ZZK0|G8ZZK0_TORDC Topoisomerase I damage affected protein 2 OS=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) OX=1076872 GN=TDEL0H01850 PE=3 SV=1
MM1 pKa = 7.1RR2 pKa = 11.84AKK4 pKa = 9.09WRR6 pKa = 11.84KK7 pKa = 8.87KK8 pKa = 8.73RR9 pKa = 11.84VRR11 pKa = 11.84RR12 pKa = 11.84LKK14 pKa = 9.71RR15 pKa = 11.84KK16 pKa = 8.27RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 9.19VRR21 pKa = 11.84ARR23 pKa = 11.84SKK25 pKa = 10.98

Molecular weight: 3.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4966

0

4966

2412323

25

4909

485.8

54.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.124 ± 0.029

1.297 ± 0.012

5.973 ± 0.022

6.859 ± 0.032

4.299 ± 0.023

5.387 ± 0.026

2.148 ± 0.012

5.874 ± 0.023

6.889 ± 0.031

9.748 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.129 ± 0.013

5.066 ± 0.02

4.408 ± 0.026

4.182 ± 0.026

4.93 ± 0.021

8.647 ± 0.037

5.551 ± 0.029

6.12 ± 0.023

1.084 ± 0.01

3.282 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski