Marihabitans asiaticum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Intrasporangiaceae; Marihabitans

Average proteome isoelectric point is 5.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2675 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A560WEG0|A0A560WEG0_9MICO Transport permease protein OS=Marihabitans asiaticum OX=415218 GN=FB557_1604 PE=3 SV=1
MM1 pKa = 7.1SHH3 pKa = 7.01AGGPYY8 pKa = 10.29GSDD11 pKa = 3.53APPPPPPGQGAGGGYY26 pKa = 10.13GGYY29 pKa = 9.13PGPAGGPGEE38 pKa = 4.73AGYY41 pKa = 10.51GPPGDD46 pKa = 4.32GGYY49 pKa = 10.52GPPGGGYY56 pKa = 8.66PPHH59 pKa = 6.97VDD61 pKa = 3.79GYY63 pKa = 11.46GEE65 pKa = 4.04QPPKK69 pKa = 10.51KK70 pKa = 10.11RR71 pKa = 11.84NTLLIGALIGGALLLLLCCGGVVALGMMGSSGFDD105 pKa = 3.23EE106 pKa = 5.53APGEE110 pKa = 4.45TTSATSEE117 pKa = 4.06PSEE120 pKa = 4.48SPTSSEE126 pKa = 4.1TPTQSEE132 pKa = 5.06TPTSSASPSEE142 pKa = 4.47SEE144 pKa = 4.26GSASEE149 pKa = 4.65GEE151 pKa = 4.33DD152 pKa = 3.75LGFPDD157 pKa = 6.09EE158 pKa = 4.16FDD160 pKa = 2.6GWQRR164 pKa = 11.84SDD166 pKa = 3.48QQASAPQGSQGAIYY180 pKa = 9.67TKK182 pKa = 10.16DD183 pKa = 3.19DD184 pKa = 3.39KK185 pKa = 11.6AIVVVATDD193 pKa = 4.03DD194 pKa = 4.1APGAMDD200 pKa = 4.34GFKK203 pKa = 10.14MVWSDD208 pKa = 4.79DD209 pKa = 3.52KK210 pKa = 11.75DD211 pKa = 3.68VDD213 pKa = 3.92GGVCGKK219 pKa = 9.89IVSQTQCAATDD230 pKa = 3.86DD231 pKa = 3.94GTIFILNDD239 pKa = 3.15TDD241 pKa = 4.73GGDD244 pKa = 3.76FEE246 pKa = 5.43QVMGTLQAFLDD257 pKa = 3.94ARR259 pKa = 4.09

Molecular weight: 25.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A560WGI1|A0A560WGI1_9MICO CP family cyanate transporter-like MFS transporter OS=Marihabitans asiaticum OX=415218 GN=FB557_0329 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84SILANRR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.29GRR40 pKa = 11.84RR41 pKa = 11.84KK42 pKa = 10.19LSAA45 pKa = 3.66

Molecular weight: 5.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2675

0

2675

889342

29

3310

332.5

35.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.852 ± 0.065

0.7 ± 0.013

6.51 ± 0.042

6.351 ± 0.041

2.527 ± 0.029

9.396 ± 0.04

2.227 ± 0.024

3.6 ± 0.03

1.946 ± 0.037

10.117 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.918 ± 0.018

1.512 ± 0.02

5.553 ± 0.038

2.969 ± 0.023

7.755 ± 0.054

5.513 ± 0.034

5.959 ± 0.036

9.275 ± 0.046

1.49 ± 0.022

1.831 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski