Salmonella phage templet

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 59 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G8RIE4|A0A6G8RIE4_9CAUD Putative UvsX-like protein OS=Salmonella phage templet OX=2713323 GN=templet_58 PE=4 SV=1
MM1 pKa = 7.13ATIARR6 pKa = 11.84NVSQAYY12 pKa = 8.62TDD14 pKa = 3.55ALRR17 pKa = 11.84WVAVMLGKK25 pKa = 9.85PEE27 pKa = 3.9DD28 pKa = 3.98TEE30 pKa = 4.63VEE32 pKa = 4.1FRR34 pKa = 11.84LNMDD38 pKa = 4.31FFLEE42 pKa = 4.2PMTAQDD48 pKa = 3.14RR49 pKa = 11.84AAWMADD55 pKa = 2.7INAGLLPATAYY66 pKa = 10.31YY67 pKa = 10.6AALRR71 pKa = 11.84KK72 pKa = 10.1AGVTDD77 pKa = 3.3WTDD80 pKa = 3.2ADD82 pKa = 3.6IKK84 pKa = 11.07DD85 pKa = 4.49AIEE88 pKa = 4.59DD89 pKa = 3.71APLPLGAVTQVAGGIPQAVQQPEE112 pKa = 3.68

Molecular weight: 12.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G8RI67|A0A6G8RI67_9CAUD Calcineurin-like phosphoesterase superfamily domain protein OS=Salmonella phage templet OX=2713323 GN=templet_36 PE=4 SV=1
MM1 pKa = 7.52SLATDD6 pKa = 3.71ILKK9 pKa = 10.26HH10 pKa = 6.11AGVNLAPPSSAVTKK24 pKa = 10.32KK25 pKa = 7.19VTRR28 pKa = 11.84VKK30 pKa = 10.59EE31 pKa = 3.94KK32 pKa = 10.79VKK34 pKa = 10.47RR35 pKa = 11.84KK36 pKa = 8.52PKK38 pKa = 10.04PRR40 pKa = 11.84VKK42 pKa = 10.0PVNEE46 pKa = 4.14MPDD49 pKa = 3.55VYY51 pKa = 10.73PRR53 pKa = 11.84IPGVHH58 pKa = 4.6QPKK61 pKa = 9.16YY62 pKa = 10.53CVGKK66 pKa = 10.16GLWRR70 pKa = 11.84AHH72 pKa = 6.43SYY74 pKa = 10.54DD75 pKa = 3.01GKK77 pKa = 10.98KK78 pKa = 10.05VVNLGEE84 pKa = 4.35FSSQARR90 pKa = 11.84AHH92 pKa = 6.01MAVKK96 pKa = 10.46LYY98 pKa = 10.67KK99 pKa = 9.81LWRR102 pKa = 11.84KK103 pKa = 9.46RR104 pKa = 11.84GYY106 pKa = 10.35SEE108 pKa = 5.16IPHH111 pKa = 6.33KK112 pKa = 10.54PSIRR116 pKa = 11.84LYY118 pKa = 8.83TFRR121 pKa = 6.0

Molecular weight: 13.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

59

0

59

12869

30

1032

218.1

23.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.395 ± 0.611

1.049 ± 0.137

5.983 ± 0.216

6.543 ± 0.389

3.73 ± 0.182

7.631 ± 0.255

1.64 ± 0.172

4.756 ± 0.196

5.929 ± 0.352

7.903 ± 0.341

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.58 ± 0.162

4.266 ± 0.232

3.87 ± 0.226

3.551 ± 0.244

5.688 ± 0.229

5.929 ± 0.271

6.442 ± 0.321

7.32 ± 0.324

1.461 ± 0.173

3.357 ± 0.155
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski