Coconut foliar decay virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Mulpavirales; Metaxyviridae; Cofodevirus

Average proteome isoelectric point is 7.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q66007|Q66007_9VIRU ORF6 OS=Coconut foliar decay virus OX=12474 PE=4 SV=1
MM1 pKa = 7.63TGFTWSRR8 pKa = 11.84PVVPTNRR15 pKa = 11.84IEE17 pKa = 4.15TTVRR21 pKa = 11.84RR22 pKa = 11.84NGCFSSTEE30 pKa = 3.74SRR32 pKa = 11.84LVLEE36 pKa = 4.97SKK38 pKa = 10.59GHH40 pKa = 6.5DD41 pKa = 3.43WPNDD45 pKa = 3.41LLRR48 pKa = 11.84NLMNSAWKK56 pKa = 8.24TQADD60 pKa = 4.22TEE62 pKa = 4.38DD63 pKa = 3.32ALYY66 pKa = 10.4TEE68 pKa = 5.28LRR70 pKa = 11.84WNGQDD75 pKa = 3.21GPLKK79 pKa = 10.25IRR81 pKa = 11.84SHH83 pKa = 5.01FHH85 pKa = 4.53ITIGSLKK92 pKa = 9.84CCLRR96 pKa = 11.84SEE98 pKa = 4.36SQRR101 pKa = 11.84TIAQSSGYY109 pKa = 10.45ADD111 pKa = 3.51EE112 pKa = 4.63TEE114 pKa = 4.5EE115 pKa = 4.28TGSPCLPNISDD126 pKa = 3.85SSPTGSTHH134 pKa = 4.56VVEE137 pKa = 5.39PEE139 pKa = 3.48RR140 pKa = 11.84TYY142 pKa = 10.44CTSTSRR148 pKa = 11.84TQNEE152 pKa = 3.83II153 pKa = 3.32

Molecular weight: 17.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q66009|Q66009_9VIRU ORF5 OS=Coconut foliar decay virus OX=12474 PE=4 SV=1
MM1 pKa = 6.87RR2 pKa = 11.84TRR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84EE9 pKa = 3.58VRR11 pKa = 11.84VCQISRR17 pKa = 11.84TQARR21 pKa = 11.84LVLHH25 pKa = 6.37MWWNQKK31 pKa = 8.92GRR33 pKa = 11.84IVPVHH38 pKa = 6.96RR39 pKa = 11.84GPKK42 pKa = 8.2TKK44 pKa = 10.35FNPRR48 pKa = 11.84CTQVV52 pKa = 2.51

Molecular weight: 6.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

659

48

290

109.8

12.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.945 ± 0.683

2.883 ± 0.492

4.401 ± 0.936

6.07 ± 0.946

3.49 ± 0.836

6.677 ± 0.858

2.58 ± 0.326

5.918 ± 1.037

4.097 ± 0.506

9.256 ± 1.509

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.821 ± 0.836

4.097 ± 0.452

6.222 ± 0.621

4.097 ± 0.946

9.105 ± 1.593

6.525 ± 2.037

6.677 ± 2.065

6.829 ± 1.027

2.124 ± 0.393

3.187 ± 0.948
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski