Candidatus Thiodictyon syntrophicum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiodictyon

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6068 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2K8UEG2|A0A2K8UEG2_9GAMM Glyco_trans_4-like_N domain-containing protein OS=Candidatus Thiodictyon syntrophicum OX=1166950 GN=THSYN_24880 PE=4 SV=1
MM1 pKa = 7.14ATLVVDD7 pKa = 4.6RR8 pKa = 11.84GLPVANLTTPNLNISAGVNRR28 pKa = 11.84SNVDD32 pKa = 2.72WSGYY36 pKa = 5.6TAGGQSFITGDD47 pKa = 3.81TFQMPVDD54 pKa = 3.99QQWTIDD60 pKa = 3.97TIRR63 pKa = 11.84TWSPAIPLAGSDD75 pKa = 3.97TLGSLYY81 pKa = 10.97SSITLYY87 pKa = 11.3ADD89 pKa = 4.19LYY91 pKa = 11.1SNLGNDD97 pKa = 3.63PATWAINKK105 pKa = 9.9AGTISGNTSNNDD117 pKa = 2.66ITFTRR122 pKa = 11.84VLYY125 pKa = 10.57QDD127 pKa = 3.1ATAPNDD133 pKa = 3.73DD134 pKa = 3.89YY135 pKa = 11.54QGQSGTWSQIWQVDD149 pKa = 4.04FKK151 pKa = 11.29NLNWVVTPGDD161 pKa = 3.79WIVFGVDD168 pKa = 2.87AAALTTLPWSNHH180 pKa = 4.62ASNAALSNSPQQDD193 pKa = 2.97ADD195 pKa = 4.03DD196 pKa = 4.82FFTFINMTAGFYY208 pKa = 10.92GDD210 pKa = 4.81WYY212 pKa = 10.33DD213 pKa = 4.74CDD215 pKa = 3.84SASDD219 pKa = 4.29PEE221 pKa = 4.73CVWGNSSDD229 pKa = 3.61INVQVFATPAPGSLALALIGLFGLSAARR257 pKa = 11.84RR258 pKa = 11.84TEE260 pKa = 3.76ARR262 pKa = 11.84STAARR267 pKa = 11.84CAPP270 pKa = 3.71

Molecular weight: 28.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2K8UGB6|A0A2K8UGB6_9GAMM ATP synthase subunit beta OS=Candidatus Thiodictyon syntrophicum OX=1166950 GN=atpD PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.56RR3 pKa = 11.84TFQPSRR9 pKa = 11.84IKK11 pKa = 10.5RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.94GFRR19 pKa = 11.84ARR21 pKa = 11.84SATRR25 pKa = 11.84NGRR28 pKa = 11.84KK29 pKa = 9.31VLSARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.62GRR39 pKa = 11.84VRR41 pKa = 11.84LAPP44 pKa = 3.89

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6068

0

6068

2008834

27

3891

331.1

36.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.777 ± 0.053

1.069 ± 0.013

5.858 ± 0.025

5.429 ± 0.033

3.301 ± 0.018

8.547 ± 0.038

2.11 ± 0.017

4.235 ± 0.022

2.429 ± 0.023

11.581 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.818 ± 0.014

2.312 ± 0.018

5.952 ± 0.028

3.744 ± 0.019

8.138 ± 0.035

4.639 ± 0.022

5.234 ± 0.032

6.935 ± 0.028

1.536 ± 0.015

2.358 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski