Salmonella phage 7-11

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 151 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G0X509|G0X509_9CAUD Uncharacterized protein OS=Salmonella phage 7-11 OX=1054968 PE=4 SV=1
MM1 pKa = 7.63KK2 pKa = 10.5VGLLIANGGDD12 pKa = 3.51GSASIHH18 pKa = 5.42YY19 pKa = 9.81FKK21 pKa = 11.19DD22 pKa = 3.69LIYY25 pKa = 10.78ASQLQDD31 pKa = 3.77CDD33 pKa = 3.87THH35 pKa = 8.74CEE37 pKa = 4.12TFGLNDD43 pKa = 3.48SMDD46 pKa = 4.14IIDD49 pKa = 4.2VPEE52 pKa = 4.26GFYY55 pKa = 10.79PPGGFSDD62 pKa = 4.38YY63 pKa = 11.16EE64 pKa = 3.95WDD66 pKa = 4.16LEE68 pKa = 4.34EE69 pKa = 4.59

Molecular weight: 7.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G0X578|G0X578_9CAUD Uncharacterized protein OS=Salmonella phage 7-11 OX=1054968 PE=4 SV=1
MM1 pKa = 7.29RR2 pKa = 11.84QSAFQLLKK10 pKa = 11.08ASLDD14 pKa = 3.95NNNGAPVSQVQRR26 pKa = 11.84EE27 pKa = 3.96VLLNKK32 pKa = 9.95KK33 pKa = 9.2VLYY36 pKa = 10.14RR37 pKa = 11.84YY38 pKa = 9.04ARR40 pKa = 11.84PTQQVFGTITAFTGNIQRR58 pKa = 11.84VWVKK62 pKa = 9.53WSDD65 pKa = 3.52GAVEE69 pKa = 3.92ARR71 pKa = 11.84SIKK74 pKa = 10.28SLEE77 pKa = 4.17VIKK80 pKa = 10.97

Molecular weight: 9.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

151

0

151

26783

27

976

177.4

20.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.919 ± 0.315

1.217 ± 0.102

6.239 ± 0.167

7.158 ± 0.309

4.144 ± 0.197

6.963 ± 0.264

2.061 ± 0.114

5.119 ± 0.156

6.624 ± 0.241

7.113 ± 0.202

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.953 ± 0.093

5.022 ± 0.149

3.696 ± 0.139

4.073 ± 0.226

5.395 ± 0.209

6.138 ± 0.18

5.686 ± 0.231

7.143 ± 0.194

1.729 ± 0.14

3.607 ± 0.15
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski