Actinomycetospora cinnamomea

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales; Pseudonocardiaceae; Actinomycetospora

Average proteome isoelectric point is 6.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5694 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2U1F6R2|A0A2U1F6R2_9PSEU Uncharacterized protein OS=Actinomycetospora cinnamomea OX=663609 GN=C8D89_11026 PE=4 SV=1
MM1 pKa = 7.83RR2 pKa = 11.84GRR4 pKa = 11.84RR5 pKa = 11.84SSRR8 pKa = 11.84SAAVVLAGCVGLAVMAPGLALAAPVPTSEE37 pKa = 4.94DD38 pKa = 3.19ACEE41 pKa = 3.89AAGGRR46 pKa = 11.84WTAGTCVPQRR56 pKa = 11.84TAPLTTSPAVEE67 pKa = 4.72DD68 pKa = 4.0EE69 pKa = 4.47TGGAATTPDD78 pKa = 3.91TPEE81 pKa = 3.68TAAPTTTTDD90 pKa = 3.53GLPSGGNPSSGTPATGGGSGGAGGAVGAGAGAQEE124 pKa = 4.68TPDD127 pKa = 3.62PTADD131 pKa = 3.58EE132 pKa = 4.83ASASADD138 pKa = 3.14QTTRR142 pKa = 11.84SPEE145 pKa = 4.09EE146 pKa = 3.86IGTQQSTARR155 pKa = 11.84ALIGPSALTSADD167 pKa = 3.36PAALVQDD174 pKa = 4.35LVEE177 pKa = 4.67GASGPGIDD185 pKa = 4.32FTNVPSPLTEE195 pKa = 4.55GGLPFEE201 pKa = 4.37NLEE204 pKa = 4.13IPEE207 pKa = 4.57LPADD211 pKa = 3.97GVFASPRR218 pKa = 11.84DD219 pKa = 3.47ACAYY223 pKa = 10.12LAGSVPAPEE232 pKa = 4.48QGAEE236 pKa = 3.91DD237 pKa = 3.46LAAAFEE243 pKa = 4.7SFCGALPEE251 pKa = 5.15DD252 pKa = 4.08FTEE255 pKa = 4.82FDD257 pKa = 3.33PTTIVGGLLDD267 pKa = 6.29LINKK271 pKa = 8.39LLKK274 pKa = 10.52ALPTPGNPIPSNPPAHH290 pKa = 6.39VPHH293 pKa = 7.25EE294 pKa = 4.23YY295 pKa = 9.5WGWWHH300 pKa = 6.29KK301 pKa = 10.96QYY303 pKa = 11.38DD304 pKa = 4.23VNCDD308 pKa = 3.14DD309 pKa = 3.55VTYY312 pKa = 11.01DD313 pKa = 3.4EE314 pKa = 5.55ANAILAWDD322 pKa = 3.71YY323 pKa = 11.78SDD325 pKa = 5.14PFNLDD330 pKa = 2.8GDD332 pKa = 4.36NDD334 pKa = 4.08GEE336 pKa = 4.1ACEE339 pKa = 5.02RR340 pKa = 11.84NWHH343 pKa = 6.39HH344 pKa = 7.68DD345 pKa = 3.17DD346 pKa = 3.6VEE348 pKa = 4.25YY349 pKa = 11.18VEE351 pKa = 4.21YY352 pKa = 10.92VEE354 pKa = 4.04YY355 pKa = 11.04VEE357 pKa = 4.19YY358 pKa = 11.08VEE360 pKa = 4.23YY361 pKa = 10.69DD362 pKa = 3.48SYY364 pKa = 11.7PVGGVATGDD373 pKa = 3.47GSTGADD379 pKa = 2.92SSAATGAEE387 pKa = 3.99VALAAGALSGLGLTGLVLVRR407 pKa = 11.84RR408 pKa = 11.84FARR411 pKa = 11.84QGG413 pKa = 3.07

Molecular weight: 41.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2U1FR97|A0A2U1FR97_9PSEU Methylmalonyl-CoA epimerase OS=Actinomycetospora cinnamomea OX=663609 GN=C8D89_101562 PE=3 SV=1
MM1 pKa = 7.74PATAGRR7 pKa = 11.84VPARR11 pKa = 11.84PRR13 pKa = 11.84VRR15 pKa = 11.84GPAAARR21 pKa = 11.84PSRR24 pKa = 11.84ARR26 pKa = 11.84PAARR30 pKa = 11.84PVAPPAPVRR39 pKa = 11.84PPARR43 pKa = 11.84VPGRR47 pKa = 11.84RR48 pKa = 11.84PRR50 pKa = 11.84PTARR54 pKa = 11.84APAAPRR60 pKa = 11.84VPAPVPAPPRR70 pKa = 11.84ARR72 pKa = 11.84VPAPSPARR80 pKa = 11.84PPRR83 pKa = 11.84RR84 pKa = 11.84RR85 pKa = 11.84RR86 pKa = 11.84RR87 pKa = 11.84PRR89 pKa = 11.84PPRR92 pKa = 11.84RR93 pKa = 11.84RR94 pKa = 11.84RR95 pKa = 11.84LPRR98 pKa = 11.84PVTPPAARR106 pKa = 11.84RR107 pKa = 11.84RR108 pKa = 11.84AHH110 pKa = 6.9RR111 pKa = 11.84APAGTVPVPVATARR125 pKa = 11.84VRR127 pKa = 11.84VARR130 pKa = 11.84RR131 pKa = 11.84GPVPSVPPSAVATSARR147 pKa = 11.84AEE149 pKa = 4.14VEE151 pKa = 4.01TAGTVVTARR160 pKa = 11.84PRR162 pKa = 11.84APVSSSSVRR171 pKa = 11.84PRR173 pKa = 11.84RR174 pKa = 11.84RR175 pKa = 11.84TQARR179 pKa = 11.84AVTARR184 pKa = 11.84RR185 pKa = 11.84SPRR188 pKa = 11.84ARR190 pKa = 11.84RR191 pKa = 11.84PRR193 pKa = 11.84SPGRR197 pKa = 11.84RR198 pKa = 11.84PRR200 pKa = 11.84ASATTPSGWAPAPRR214 pKa = 11.84RR215 pKa = 11.84ARR217 pKa = 11.84SVRR220 pKa = 11.84SRR222 pKa = 11.84VRR224 pKa = 11.84AARR227 pKa = 11.84VRR229 pKa = 11.84RR230 pKa = 11.84VTARR234 pKa = 11.84PAPTPRR240 pKa = 11.84RR241 pKa = 11.84ARR243 pKa = 11.84RR244 pKa = 11.84VTASVRR250 pKa = 11.84RR251 pKa = 11.84RR252 pKa = 11.84RR253 pKa = 11.84TACPVPAAPVVPGRR267 pKa = 11.84RR268 pKa = 11.84RR269 pKa = 11.84RR270 pKa = 11.84RR271 pKa = 11.84ATCPRR276 pKa = 11.84VRR278 pKa = 11.84TPAA281 pKa = 3.42

Molecular weight: 30.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5694

0

5694

1792867

27

4335

314.9

33.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.567 ± 0.058

0.728 ± 0.009

6.542 ± 0.027

5.646 ± 0.031

2.402 ± 0.017

9.841 ± 0.031

2.329 ± 0.017

2.65 ± 0.02

1.158 ± 0.019

10.272 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.559 ± 0.012

1.264 ± 0.014

6.626 ± 0.037

2.287 ± 0.018

8.886 ± 0.033

4.534 ± 0.021

5.878 ± 0.023

9.724 ± 0.04

1.471 ± 0.013

1.636 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski