Sapajus apella (Brown-capped capuchin) (Cebus apella)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria;

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 49368 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6J3HGH0|A0A6J3HGH0_SAPAP arrestin domain-containing protein 1 isoform X1 OS=Sapajus apella OX=9515 GN=ARRDC1 PE=3 SV=1
MM1 pKa = 7.62TFTLDD6 pKa = 3.58DD7 pKa = 3.74GTGVLEE13 pKa = 4.69AYY15 pKa = 11.0LMDD18 pKa = 4.05SDD20 pKa = 5.86KK21 pKa = 10.89FFQIPASEE29 pKa = 4.08VLMDD33 pKa = 6.21DD34 pKa = 5.09DD35 pKa = 4.88LQKK38 pKa = 11.56SMDD41 pKa = 3.91MIMDD45 pKa = 3.93MFCPPGIKK53 pKa = 9.57VDD55 pKa = 4.05AYY57 pKa = 9.77PWLEE61 pKa = 4.05CLIKK65 pKa = 10.55SYY67 pKa = 11.3NVTNGTEE74 pKa = 3.94NQICYY79 pKa = 10.31QIFDD83 pKa = 3.7TRR85 pKa = 11.84VAEE88 pKa = 4.48DD89 pKa = 3.65VII91 pKa = 4.67

Molecular weight: 10.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6J3JNK7|A0A6J3JNK7_SAPAP Alkaline ceramidase OS=Sapajus apella OX=9515 GN=ACER2 PE=3 SV=1
MM1 pKa = 7.1RR2 pKa = 11.84AKK4 pKa = 9.12WRR6 pKa = 11.84KK7 pKa = 9.1KK8 pKa = 9.32RR9 pKa = 11.84MRR11 pKa = 11.84RR12 pKa = 11.84LKK14 pKa = 10.08RR15 pKa = 11.84KK16 pKa = 8.21RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 8.46MRR21 pKa = 11.84QRR23 pKa = 11.84SKK25 pKa = 11.41

Molecular weight: 3.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

20350

29018

49368

36383883

24

34567

737.0

82.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.956 ± 0.013

2.052 ± 0.008

4.927 ± 0.008

7.447 ± 0.016

3.399 ± 0.008

6.347 ± 0.013

2.582 ± 0.005

4.295 ± 0.01

5.951 ± 0.015

9.724 ± 0.013

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.126 ± 0.005

3.624 ± 0.008

6.317 ± 0.016

5.003 ± 0.013

5.671 ± 0.01

8.636 ± 0.013

5.376 ± 0.009

5.902 ± 0.009

1.13 ± 0.003

2.531 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski