Chicory yellow mottle virus large satellite RNA

Taxonomy: Viruses; Satellites; RNA satellites; Single stranded RNA satellites; unclassified Single stranded RNA satellites

Average proteome isoelectric point is 9.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q04325|Q04325_9VIRU Uncharacterized protein OS=Chicory yellow mottle virus large satellite RNA OX=192021 PE=4 SV=1
MM1 pKa = 7.44ARR3 pKa = 11.84TVIIHH8 pKa = 6.6AVASTRR14 pKa = 11.84SVTASPTTANGRR26 pKa = 11.84GRR28 pKa = 11.84ASRR31 pKa = 11.84KK32 pKa = 6.92CTKK35 pKa = 10.48NNAAVEE41 pKa = 4.22SSRR44 pKa = 11.84PRR46 pKa = 11.84KK47 pKa = 9.16LQRR50 pKa = 11.84TAPIKK55 pKa = 10.1TGTRR59 pKa = 11.84DD60 pKa = 3.24NRR62 pKa = 11.84SYY64 pKa = 11.3AQVVMEE70 pKa = 4.57NCHH73 pKa = 6.59HH74 pKa = 5.83SHH76 pKa = 5.66QSKK79 pKa = 10.37ARR81 pKa = 11.84SSEE84 pKa = 3.84KK85 pKa = 10.08FVAAKK90 pKa = 10.01KK91 pKa = 9.21VARR94 pKa = 11.84PSVAVPSKK102 pKa = 10.1LTTGNKK108 pKa = 9.45FDD110 pKa = 3.41VLGFEE115 pKa = 4.15RR116 pKa = 11.84HH117 pKa = 5.95AIDD120 pKa = 3.43RR121 pKa = 11.84AVATSVPTKK130 pKa = 10.36SVQEE134 pKa = 4.15VVSVQKK140 pKa = 9.64GTQYY144 pKa = 10.78VVNHH148 pKa = 6.63TGHH151 pKa = 6.68SYY153 pKa = 9.88GCSRR157 pKa = 11.84KK158 pKa = 10.05GNYY161 pKa = 10.04ASTSYY166 pKa = 10.35RR167 pKa = 11.84CCAKK171 pKa = 10.36VVEE174 pKa = 4.45EE175 pKa = 4.14PVMEE179 pKa = 4.52KK180 pKa = 9.31KK181 pKa = 8.82TVFTDD186 pKa = 3.71VPDD189 pKa = 3.81EE190 pKa = 4.09AAEE193 pKa = 4.09LLRR196 pKa = 11.84QEE198 pKa = 5.39FLAKK202 pKa = 9.6MPQLGHH208 pKa = 6.3SVTLCPVGVDD218 pKa = 3.08TLAWGNCSEE227 pKa = 4.87LDD229 pKa = 3.53SAVAAKK235 pKa = 9.02PAWFGVPVKK244 pKa = 8.31QQRR247 pKa = 11.84KK248 pKa = 8.56KK249 pKa = 9.64MSRR252 pKa = 11.84RR253 pKa = 11.84DD254 pKa = 3.56LRR256 pKa = 11.84NLLSALRR263 pKa = 11.84LARR266 pKa = 11.84TTVNKK271 pKa = 10.41SCSLGDD277 pKa = 3.29AFMWAWRR284 pKa = 11.84TLGFGGAAPLPDD296 pKa = 3.6LKK298 pKa = 10.89GWEE301 pKa = 3.94LSHH304 pKa = 8.28RR305 pKa = 11.84EE306 pKa = 3.72EE307 pKa = 3.99RR308 pKa = 11.84AAAPLHH314 pKa = 6.11MYY316 pKa = 10.39VLVIRR321 pKa = 11.84CGGVGFSLWTGCFDD335 pKa = 4.73APGKK339 pKa = 9.73FIPAMVFHH347 pKa = 6.86GFLLPLSYY355 pKa = 10.4SWQSLEE361 pKa = 3.93VV362 pKa = 3.37

Molecular weight: 39.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q04325|Q04325_9VIRU Uncharacterized protein OS=Chicory yellow mottle virus large satellite RNA OX=192021 PE=4 SV=1
MM1 pKa = 7.44ARR3 pKa = 11.84TVIIHH8 pKa = 6.6AVASTRR14 pKa = 11.84SVTASPTTANGRR26 pKa = 11.84GRR28 pKa = 11.84ASRR31 pKa = 11.84KK32 pKa = 6.92CTKK35 pKa = 10.48NNAAVEE41 pKa = 4.22SSRR44 pKa = 11.84PRR46 pKa = 11.84KK47 pKa = 9.16LQRR50 pKa = 11.84TAPIKK55 pKa = 10.1TGTRR59 pKa = 11.84DD60 pKa = 3.24NRR62 pKa = 11.84SYY64 pKa = 11.3AQVVMEE70 pKa = 4.57NCHH73 pKa = 6.59HH74 pKa = 5.83SHH76 pKa = 5.66QSKK79 pKa = 10.37ARR81 pKa = 11.84SSEE84 pKa = 3.84KK85 pKa = 10.08FVAAKK90 pKa = 10.01KK91 pKa = 9.21VARR94 pKa = 11.84PSVAVPSKK102 pKa = 10.1LTTGNKK108 pKa = 9.45FDD110 pKa = 3.41VLGFEE115 pKa = 4.15RR116 pKa = 11.84HH117 pKa = 5.95AIDD120 pKa = 3.43RR121 pKa = 11.84AVATSVPTKK130 pKa = 10.36SVQEE134 pKa = 4.15VVSVQKK140 pKa = 9.64GTQYY144 pKa = 10.78VVNHH148 pKa = 6.63TGHH151 pKa = 6.68SYY153 pKa = 9.88GCSRR157 pKa = 11.84KK158 pKa = 10.05GNYY161 pKa = 10.04ASTSYY166 pKa = 10.35RR167 pKa = 11.84CCAKK171 pKa = 10.36VVEE174 pKa = 4.45EE175 pKa = 4.14PVMEE179 pKa = 4.52KK180 pKa = 9.31KK181 pKa = 8.82TVFTDD186 pKa = 3.71VPDD189 pKa = 3.81EE190 pKa = 4.09AAEE193 pKa = 4.09LLRR196 pKa = 11.84QEE198 pKa = 5.39FLAKK202 pKa = 9.6MPQLGHH208 pKa = 6.3SVTLCPVGVDD218 pKa = 3.08TLAWGNCSEE227 pKa = 4.87LDD229 pKa = 3.53SAVAAKK235 pKa = 9.02PAWFGVPVKK244 pKa = 8.31QQRR247 pKa = 11.84KK248 pKa = 8.56KK249 pKa = 9.64MSRR252 pKa = 11.84RR253 pKa = 11.84DD254 pKa = 3.56LRR256 pKa = 11.84NLLSALRR263 pKa = 11.84LARR266 pKa = 11.84TTVNKK271 pKa = 10.41SCSLGDD277 pKa = 3.29AFMWAWRR284 pKa = 11.84TLGFGGAAPLPDD296 pKa = 3.6LKK298 pKa = 10.89GWEE301 pKa = 3.94LSHH304 pKa = 8.28RR305 pKa = 11.84EE306 pKa = 3.72EE307 pKa = 3.99RR308 pKa = 11.84AAAPLHH314 pKa = 6.11MYY316 pKa = 10.39VLVIRR321 pKa = 11.84CGGVGFSLWTGCFDD335 pKa = 4.73APGKK339 pKa = 9.73FIPAMVFHH347 pKa = 6.86GFLLPLSYY355 pKa = 10.4SWQSLEE361 pKa = 3.93VV362 pKa = 3.37

Molecular weight: 39.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

362

362

362

362.0

39.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.773 ± 0.0

2.762 ± 0.0

3.039 ± 0.0

4.42 ± 0.0

3.591 ± 0.0

6.63 ± 0.0

3.039 ± 0.0

1.657 ± 0.0

6.63 ± 0.0

7.459 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.21 ± 0.0

3.039 ± 0.0

4.972 ± 0.0

3.039 ± 0.0

7.459 ± 0.0

8.84 ± 0.0

6.63 ± 0.0

9.945 ± 0.0

1.934 ± 0.0

1.934 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski