Weissella oryzae (strain DSM 25784 / JCM 18191 / SG25)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Weissella; Weissella oryzae

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2217 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A069CXA8|A0A069CXA8_WEIOS Phage head-to-tail connecting protein OS=Weissella oryzae (strain DSM 25784 / JCM 18191 / SG25) OX=1329250 GN=WOSG25_230150 PE=4 SV=1
MM1 pKa = 7.33LVYY4 pKa = 10.09IEE6 pKa = 5.57KK7 pKa = 9.2YY8 pKa = 8.75TIANILQTLNGLKK21 pKa = 10.17YY22 pKa = 10.46SHH24 pKa = 6.5SQGDD28 pKa = 3.68FTGTKK33 pKa = 9.63SGAVTLIYY41 pKa = 10.38EE42 pKa = 4.29VDD44 pKa = 3.43QASVSDD50 pKa = 4.18SDD52 pKa = 4.22SMSDD56 pKa = 3.34SEE58 pKa = 5.08SISEE62 pKa = 4.36SVSEE66 pKa = 4.74SISSSGLTLEE76 pKa = 4.9SMSDD80 pKa = 3.4LTNGSDD86 pKa = 4.38SLPHH90 pKa = 6.48NNSLPNTGMVDD101 pKa = 3.61EE102 pKa = 5.19VSLQVFSS109 pKa = 4.21

Molecular weight: 11.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A069CUA8|A0A069CUA8_WEIOS Uncharacterized protein OS=Weissella oryzae (strain DSM 25784 / JCM 18191 / SG25) OX=1329250 GN=WOSG25_050450 PE=4 SV=1
MM1 pKa = 7.62LMGIRR6 pKa = 11.84KK7 pKa = 9.86SIRR10 pKa = 11.84LSMLMGIRR18 pKa = 11.84KK19 pKa = 9.9SIRR22 pKa = 11.84LSMLMGIRR30 pKa = 11.84KK31 pKa = 9.9SIRR34 pKa = 11.84LSMLMGIRR42 pKa = 11.84KK43 pKa = 9.9SIRR46 pKa = 11.84LSMLMGIRR54 pKa = 11.84KK55 pKa = 9.9SIRR58 pKa = 11.84LSMLLGICMSIRR70 pKa = 11.84LSMFKK75 pKa = 10.5RR76 pKa = 11.84ITQVILKK83 pKa = 10.05SITRR87 pKa = 11.84RR88 pKa = 11.84II89 pKa = 3.62

Molecular weight: 10.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2217

0

2217

613410

20

3736

276.7

30.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.168 ± 0.138

0.175 ± 0.009

5.785 ± 0.054

5.78 ± 0.07

4.276 ± 0.056

6.593 ± 0.06

1.691 ± 0.022

7.02 ± 0.056

6.063 ± 0.067

9.926 ± 0.082

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.668 ± 0.031

5.167 ± 0.052

3.281 ± 0.034

4.487 ± 0.047

3.983 ± 0.06

6.14 ± 0.105

6.215 ± 0.07

7.061 ± 0.038

1.092 ± 0.018

3.416 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski