Gordonia phage Yakult

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 74 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y5NY52|A0A4Y5NY52_9CAUD Head-to-tail adaptor OS=Gordonia phage Yakult OX=2584494 GN=10 PE=4 SV=1
MM1 pKa = 7.15SQQTLAEE8 pKa = 4.07LQRR11 pKa = 11.84AIEE14 pKa = 4.02AHH16 pKa = 5.98VASQFAEE23 pKa = 4.37DD24 pKa = 5.0EE25 pKa = 4.43PDD27 pKa = 3.18ATPPIVNCWFLGVGLSGVSDD47 pKa = 4.34DD48 pKa = 5.51NIVHH52 pKa = 6.86DD53 pKa = 3.94VTYY56 pKa = 10.82VVSDD60 pKa = 3.77SPAYY64 pKa = 10.56ASMGACDD71 pKa = 3.66IALEE75 pKa = 4.06QARR78 pKa = 11.84AHH80 pKa = 5.57VLYY83 pKa = 11.11GNDD86 pKa = 3.7DD87 pKa = 3.66SAA89 pKa = 5.75

Molecular weight: 9.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y5NYD6|A0A4Y5NYD6_9CAUD Uncharacterized protein OS=Gordonia phage Yakult OX=2584494 GN=67 PE=4 SV=1
MM1 pKa = 8.16AIRR4 pKa = 11.84CAKK7 pKa = 10.2SPPHH11 pKa = 6.54NMTVMRR17 pKa = 11.84IPAQLIHH24 pKa = 6.11GTLMGYY30 pKa = 9.95RR31 pKa = 11.84YY32 pKa = 9.16HH33 pKa = 7.09HH34 pKa = 6.41CHH36 pKa = 7.2CEE38 pKa = 3.61ACRR41 pKa = 11.84QANTDD46 pKa = 3.0YY47 pKa = 10.94CRR49 pKa = 11.84RR50 pKa = 11.84QRR52 pKa = 11.84EE53 pKa = 3.77KK54 pKa = 10.64RR55 pKa = 11.84LARR58 pKa = 11.84GIPKK62 pKa = 9.73HH63 pKa = 4.94VHH65 pKa = 4.59GTANGYY71 pKa = 10.22GNYY74 pKa = 10.02GCRR77 pKa = 11.84CSRR80 pKa = 11.84CYY82 pKa = 10.44AAWSAKK88 pKa = 8.59MKK90 pKa = 10.3QRR92 pKa = 11.84TRR94 pKa = 11.84RR95 pKa = 11.84DD96 pKa = 3.09RR97 pKa = 3.95

Molecular weight: 11.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

74

0

74

15231

31

1620

205.8

22.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.439 ± 0.446

0.998 ± 0.163

6.9 ± 0.274

5.515 ± 0.328

3.053 ± 0.198

8.437 ± 0.581

2.108 ± 0.223

4.524 ± 0.183

4.53 ± 0.329

7.813 ± 0.226

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.692 ± 0.163

2.935 ± 0.161

5.344 ± 0.195

3.769 ± 0.226

7.124 ± 0.484

5.502 ± 0.221

6.145 ± 0.279

7.071 ± 0.238

2.272 ± 0.165

2.83 ± 0.205
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski