Cellvibrio sp. PSBB023

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Cellvibrionaceae; Cellvibrio; unclassified Cellvibrio

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3892 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1U9NDD1|A0A1U9NDD1_9GAMM Uncharacterized protein OS=Cellvibrio sp. PSBB023 OX=1945512 GN=B0D95_16155 PE=4 SV=1
MM1 pKa = 7.95PSPIFVQITPSEE13 pKa = 4.1IGSDD17 pKa = 3.82QILTAQLQVSLQSAAGIVFGLLLNDD42 pKa = 3.36YY43 pKa = 11.17DD44 pKa = 5.32GFPDD48 pKa = 3.93PNAVNAFPKK57 pKa = 10.17YY58 pKa = 10.53NNPTPPEE65 pKa = 4.68DD66 pKa = 4.64PDD68 pKa = 3.74SDD70 pKa = 4.14PYY72 pKa = 10.68KK73 pKa = 10.35CAWDD77 pKa = 3.45IQSVSNLNTASPLLFQAVYY96 pKa = 9.31FPQVGEE102 pKa = 4.43TPDD105 pKa = 3.34QVKK108 pKa = 8.34WFLKK112 pKa = 9.92YY113 pKa = 9.69SVAGIEE119 pKa = 4.28HH120 pKa = 7.14EE121 pKa = 4.3EE122 pKa = 4.34SGWAPLGTT130 pKa = 3.89

Molecular weight: 14.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1U9NCR1|A0A1U9NCR1_9GAMM Monovalent cation/H+ antiporter subunit A OS=Cellvibrio sp. PSBB023 OX=1945512 GN=B0D95_15065 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 9.95RR12 pKa = 11.84VRR14 pKa = 11.84NHH16 pKa = 5.46GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.2SGRR28 pKa = 11.84AVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.79GRR39 pKa = 11.84AEE41 pKa = 4.04LTRR44 pKa = 11.84VV45 pKa = 3.16

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3892

0

3892

1362328

30

3990

350.0

38.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.901 ± 0.048

0.924 ± 0.015

5.567 ± 0.045

5.644 ± 0.041

3.952 ± 0.025

7.048 ± 0.045

2.189 ± 0.022

5.969 ± 0.038

4.46 ± 0.037

10.502 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.275 ± 0.018

4.302 ± 0.039

4.284 ± 0.028

4.547 ± 0.033

5.147 ± 0.037

6.499 ± 0.044

5.559 ± 0.045

6.822 ± 0.038

1.377 ± 0.016

3.029 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski