Lignipirellula cremea

Taxonomy: cellular organisms; Bacteria; PVC group; Planctomycetes; Planctomycetia; Pirellulales; Pirellulaceae; Lignipirellula

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6917 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A518DQY0|A0A518DQY0_9BACT Adenine phosphoribosyltransferase OS=Lignipirellula cremea OX=2528010 GN=apt PE=3 SV=1
MM1 pKa = 7.59ASSPFDD7 pKa = 3.68NDD9 pKa = 2.64SDD11 pKa = 4.02IPADD15 pKa = 3.56SALDD19 pKa = 3.59MDD21 pKa = 5.31LGGDD25 pKa = 3.67MSLDD29 pKa = 3.42MPVEE33 pKa = 4.11STEE36 pKa = 4.17NAEE39 pKa = 4.07QAPGDD44 pKa = 3.98MFAGVPDD51 pKa = 4.01KK52 pKa = 11.38APAGGPAEE60 pKa = 4.27ADD62 pKa = 3.27APEE65 pKa = 4.32EE66 pKa = 4.34VPVKK70 pKa = 9.76RR71 pKa = 11.84TPSDD75 pKa = 3.63VYY77 pKa = 11.23SWLLAAAFICLCTGVLLLYY96 pKa = 10.12MEE98 pKa = 4.54LRR100 pKa = 11.84DD101 pKa = 3.99YY102 pKa = 11.55GSYY105 pKa = 10.39PYY107 pKa = 10.14WKK109 pKa = 8.56TSGSAAVGASGRR121 pKa = 3.8

Molecular weight: 12.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A518DRY8|A0A518DRY8_9BACT Uncharacterized protein OS=Lignipirellula cremea OX=2528010 GN=Pla8534_23860 PE=4 SV=1
MM1 pKa = 7.18RR2 pKa = 11.84ASWNRR7 pKa = 11.84CVEE10 pKa = 4.28RR11 pKa = 11.84AASPANCRR19 pKa = 11.84PTCVMRR25 pKa = 11.84RR26 pKa = 11.84PIRR29 pKa = 11.84RR30 pKa = 11.84IRR32 pKa = 11.84LVATRR37 pKa = 11.84LPQAPRR43 pKa = 11.84PFRR46 pKa = 11.84ILDD49 pKa = 3.49RR50 pKa = 11.84LAIPLPPPPSRR61 pKa = 11.84LRR63 pKa = 11.84TIRR66 pKa = 11.84SATPLLPLRR75 pKa = 11.84LLLLSLRR82 pKa = 11.84TTIRR86 pKa = 11.84SALLPAILRR95 pKa = 11.84PPRR98 pKa = 11.84LFPRR102 pKa = 11.84TTIRR106 pKa = 11.84SVLLPALPPVTRR118 pKa = 11.84LLPLVMIRR126 pKa = 11.84SAPPPAILRR135 pKa = 11.84PPRR138 pKa = 11.84LAMIRR143 pKa = 11.84SVLLPAILRR152 pKa = 11.84PPRR155 pKa = 11.84LAMIRR160 pKa = 11.84SVHH163 pKa = 6.26PLALPPVTRR172 pKa = 11.84LLPLVMIRR180 pKa = 11.84SVLPPAIPRR189 pKa = 11.84PLLLATIRR197 pKa = 11.84LALLLAIPRR206 pKa = 11.84PPRR209 pKa = 11.84LATIRR214 pKa = 11.84LAHH217 pKa = 7.04LLALLPAPRR226 pKa = 11.84LLRR229 pKa = 11.84LATIRR234 pKa = 11.84SAPPLAILRR243 pKa = 11.84PPRR246 pKa = 11.84LATIRR251 pKa = 11.84LAHH254 pKa = 6.81LPALPPVTRR263 pKa = 11.84LLPLVMIRR271 pKa = 11.84SVLPPAILRR280 pKa = 11.84PLRR283 pKa = 11.84LATIRR288 pKa = 11.84LAHH291 pKa = 7.04LLALLPAPRR300 pKa = 11.84LLRR303 pKa = 11.84LAMIRR308 pKa = 11.84SAPPPAILRR317 pKa = 11.84PLRR320 pKa = 11.84LATIRR325 pKa = 11.84LAHH328 pKa = 7.03LLALLLVTRR337 pKa = 11.84PLRR340 pKa = 11.84LALIRR345 pKa = 11.84SAPLPLLRR353 pKa = 11.84LAPLPLIRR361 pKa = 11.84LAPLPLIRR369 pKa = 11.84SAPLLLLRR377 pKa = 11.84RR378 pKa = 11.84PLPPVGIRR386 pKa = 11.84LAMTRR391 pKa = 11.84LAPIRR396 pKa = 11.84LPRR399 pKa = 11.84LRR401 pKa = 11.84RR402 pKa = 11.84PHH404 pKa = 6.49RR405 pKa = 11.84RR406 pKa = 11.84LPRR409 pKa = 11.84PLLRR413 pKa = 11.84LRR415 pKa = 11.84RR416 pKa = 3.89

Molecular weight: 46.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6917

0

6917

2670640

29

7286

386.1

42.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.893 ± 0.038

1.152 ± 0.012

5.845 ± 0.023

6.291 ± 0.026

3.655 ± 0.014

7.748 ± 0.03

2.208 ± 0.013

4.269 ± 0.021

3.434 ± 0.023

10.472 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.073 ± 0.013

2.845 ± 0.017

5.866 ± 0.027

4.478 ± 0.025

6.9 ± 0.031

5.854 ± 0.022

5.145 ± 0.023

6.814 ± 0.022

1.566 ± 0.013

2.49 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski