Corynebacterium renale

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2134 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2A9DLK0|A0A2A9DLK0_9CORY Multisubunit sodium/proton antiporter MrpF subunit OS=Corynebacterium renale OX=1724 GN=ATK06_0534 PE=4 SV=1
MM1 pKa = 7.68EE2 pKa = 4.73LTYY5 pKa = 10.75YY6 pKa = 10.84DD7 pKa = 4.42PEE9 pKa = 6.08ADD11 pKa = 3.39AAYY14 pKa = 10.65LSLAEE19 pKa = 4.73EE20 pKa = 5.22GVASDD25 pKa = 3.92SQIAGITCDD34 pKa = 3.62KK35 pKa = 10.64IAGEE39 pKa = 4.21VEE41 pKa = 3.75IDD43 pKa = 3.42VSSDD47 pKa = 2.91GKK49 pKa = 10.78IMGIEE54 pKa = 4.2FVCASSILPATLLQNAKK71 pKa = 9.39IQRR74 pKa = 3.67

Molecular weight: 7.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2A9DMR9|A0A2A9DMR9_9CORY Endonuclease III OS=Corynebacterium renale OX=1724 GN=nth PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AHH15 pKa = 5.01KK16 pKa = 10.02HH17 pKa = 3.72GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AIVAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.72GRR40 pKa = 11.84AKK42 pKa = 9.63LTAA45 pKa = 4.21

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2134

0

2134

694073

31

2984

325.2

35.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.858 ± 0.076

0.704 ± 0.014

5.961 ± 0.047

6.301 ± 0.058

3.222 ± 0.034

8.403 ± 0.048

2.27 ± 0.026

5.142 ± 0.034

3.226 ± 0.052

9.306 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.193 ± 0.023

2.81 ± 0.026

5.242 ± 0.044

3.371 ± 0.032

6.02 ± 0.048

5.537 ± 0.039

6.284 ± 0.042

8.433 ± 0.042

1.445 ± 0.024

2.27 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski