Amino acid dipepetide frequency for Cryphonectria hypovirus 3

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.133AlaAla: 3.133 ± 0.0
0.696AlaCys: 0.696 ± 0.0
2.088AlaAsp: 2.088 ± 0.0
1.74AlaGlu: 1.74 ± 0.0
2.785AlaPhe: 2.785 ± 0.0
4.177AlaGly: 4.177 ± 0.0
1.392AlaHis: 1.392 ± 0.0
4.177AlaIle: 4.177 ± 0.0
4.525AlaLys: 4.525 ± 0.0
8.006AlaLeu: 8.006 ± 0.0
3.133AlaMet: 3.133 ± 0.0
2.785AlaAsn: 2.785 ± 0.0
1.044AlaPro: 1.044 ± 0.0
3.481AlaGln: 3.481 ± 0.0
3.829AlaArg: 3.829 ± 0.0
5.917AlaSer: 5.917 ± 0.0
3.133AlaThr: 3.133 ± 0.0
3.133AlaVal: 3.133 ± 0.0
1.74AlaTrp: 1.74 ± 0.0
2.088AlaTyr: 2.088 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.74CysAla: 1.74 ± 0.0
0.696CysCys: 0.696 ± 0.0
0.348CysAsp: 0.348 ± 0.0
1.392CysGlu: 1.392 ± 0.0
1.044CysPhe: 1.044 ± 0.0
0.696CysGly: 0.696 ± 0.0
1.392CysHis: 1.392 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.696CysLys: 0.696 ± 0.0
2.088CysLeu: 2.088 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.696CysAsn: 0.696 ± 0.0
2.436CysPro: 2.436 ± 0.0
0.348CysGln: 0.348 ± 0.0
1.392CysArg: 1.392 ± 0.0
0.348CysSer: 0.348 ± 0.0
0.348CysThr: 0.348 ± 0.0
1.74CysVal: 1.74 ± 0.0
0.348CysTrp: 0.348 ± 0.0
0.348CysTyr: 0.348 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.569AspAla: 5.569 ± 0.0
2.088AspCys: 2.088 ± 0.0
3.829AspAsp: 3.829 ± 0.0
3.133AspGlu: 3.133 ± 0.0
6.265AspPhe: 6.265 ± 0.0
3.133AspGly: 3.133 ± 0.0
1.392AspHis: 1.392 ± 0.0
2.785AspIle: 2.785 ± 0.0
1.74AspLys: 1.74 ± 0.0
6.613AspLeu: 6.613 ± 0.0
0.696AspMet: 0.696 ± 0.0
3.133AspAsn: 3.133 ± 0.0
2.785AspPro: 2.785 ± 0.0
1.392AspGln: 1.392 ± 0.0
3.481AspArg: 3.481 ± 0.0
4.525AspSer: 4.525 ± 0.0
1.392AspThr: 1.392 ± 0.0
5.569AspVal: 5.569 ± 0.0
2.785AspTrp: 2.785 ± 0.0
2.088AspTyr: 2.088 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.177GluAla: 4.177 ± 0.0
0.0GluCys: 0.0 ± 0.0
4.177GluAsp: 4.177 ± 0.0
3.829GluGlu: 3.829 ± 0.0
3.829GluPhe: 3.829 ± 0.0
2.436GluGly: 2.436 ± 0.0
1.392GluHis: 1.392 ± 0.0
1.74GluIle: 1.74 ± 0.0
5.221GluLys: 5.221 ± 0.0
6.265GluLeu: 6.265 ± 0.0
1.392GluMet: 1.392 ± 0.0
2.785GluAsn: 2.785 ± 0.0
2.436GluPro: 2.436 ± 0.0
3.481GluGln: 3.481 ± 0.0
3.133GluArg: 3.133 ± 0.0
3.481GluSer: 3.481 ± 0.0
3.133GluThr: 3.133 ± 0.0
3.481GluVal: 3.481 ± 0.0
1.044GluTrp: 1.044 ± 0.0
2.785GluTyr: 2.785 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.829PheAla: 3.829 ± 0.0
0.696PheCys: 0.696 ± 0.0
3.481PheAsp: 3.481 ± 0.0
4.177PheGlu: 4.177 ± 0.0
0.696PhePhe: 0.696 ± 0.0
6.961PheGly: 6.961 ± 0.0
2.088PheHis: 2.088 ± 0.0
1.74PheIle: 1.74 ± 0.0
3.133PheLys: 3.133 ± 0.0
2.785PheLeu: 2.785 ± 0.0
2.436PheMet: 2.436 ± 0.0
1.044PheAsn: 1.044 ± 0.0
2.436PhePro: 2.436 ± 0.0
1.044PheGln: 1.044 ± 0.0
2.785PheArg: 2.785 ± 0.0
5.917PheSer: 5.917 ± 0.0
2.785PheThr: 2.785 ± 0.0
3.133PheVal: 3.133 ± 0.0
2.436PheTrp: 2.436 ± 0.0
1.392PheTyr: 1.392 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.785GlyAla: 2.785 ± 0.0
1.044GlyCys: 1.044 ± 0.0
4.525GlyAsp: 4.525 ± 0.0
5.221GlyGlu: 5.221 ± 0.0
4.873GlyPhe: 4.873 ± 0.0
4.177GlyGly: 4.177 ± 0.0
0.696GlyHis: 0.696 ± 0.0
3.133GlyIle: 3.133 ± 0.0
3.829GlyLys: 3.829 ± 0.0
5.569GlyLeu: 5.569 ± 0.0
1.392GlyMet: 1.392 ± 0.0
1.74GlyAsn: 1.74 ± 0.0
1.74GlyPro: 1.74 ± 0.0
3.481GlyGln: 3.481 ± 0.0
4.873GlyArg: 4.873 ± 0.0
4.873GlySer: 4.873 ± 0.0
4.177GlyThr: 4.177 ± 0.0
5.221GlyVal: 5.221 ± 0.0
3.481GlyTrp: 3.481 ± 0.0
3.133GlyTyr: 3.133 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.785HisAla: 2.785 ± 0.0
0.348HisCys: 0.348 ± 0.0
2.088HisAsp: 2.088 ± 0.0
2.436HisGlu: 2.436 ± 0.0
1.392HisPhe: 1.392 ± 0.0
1.392HisGly: 1.392 ± 0.0
1.392HisHis: 1.392 ± 0.0
1.044HisIle: 1.044 ± 0.0
0.696HisLys: 0.696 ± 0.0
3.829HisLeu: 3.829 ± 0.0
1.044HisMet: 1.044 ± 0.0
0.348HisAsn: 0.348 ± 0.0
1.74HisPro: 1.74 ± 0.0
0.348HisGln: 0.348 ± 0.0
0.696HisArg: 0.696 ± 0.0
1.74HisSer: 1.74 ± 0.0
1.044HisThr: 1.044 ± 0.0
1.74HisVal: 1.74 ± 0.0
0.348HisTrp: 0.348 ± 0.0
1.392HisTyr: 1.392 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
2.088IleAla: 2.088 ± 0.0
0.696IleCys: 0.696 ± 0.0
3.829IleAsp: 3.829 ± 0.0
2.436IleGlu: 2.436 ± 0.0
1.044IlePhe: 1.044 ± 0.0
3.133IleGly: 3.133 ± 0.0
0.696IleHis: 0.696 ± 0.0
2.436IleIle: 2.436 ± 0.0
2.436IleLys: 2.436 ± 0.0
4.525IleLeu: 4.525 ± 0.0
0.348IleMet: 0.348 ± 0.0
1.044IleAsn: 1.044 ± 0.0
2.785IlePro: 2.785 ± 0.0
1.74IleGln: 1.74 ± 0.0
2.785IleArg: 2.785 ± 0.0
4.525IleSer: 4.525 ± 0.0
2.785IleThr: 2.785 ± 0.0
2.088IleVal: 2.088 ± 0.0
0.0IleTrp: 0.0 ± 0.0
1.044IleTyr: 1.044 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
3.133LysAla: 3.133 ± 0.0
1.392LysCys: 1.392 ± 0.0
3.481LysAsp: 3.481 ± 0.0
2.088LysGlu: 2.088 ± 0.0
5.221LysPhe: 5.221 ± 0.0
2.785LysGly: 2.785 ± 0.0
1.74LysHis: 1.74 ± 0.0
1.392LysIle: 1.392 ± 0.0
5.221LysLys: 5.221 ± 0.0
4.525LysLeu: 4.525 ± 0.0
0.696LysMet: 0.696 ± 0.0
2.088LysAsn: 2.088 ± 0.0
2.436LysPro: 2.436 ± 0.0
3.133LysGln: 3.133 ± 0.0
5.221LysArg: 5.221 ± 0.0
2.785LysSer: 2.785 ± 0.0
2.088LysThr: 2.088 ± 0.0
4.177LysVal: 4.177 ± 0.0
2.088LysTrp: 2.088 ± 0.0
1.74LysTyr: 1.74 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
5.569LeuAla: 5.569 ± 0.0
1.044LeuCys: 1.044 ± 0.0
7.309LeuAsp: 7.309 ± 0.0
5.569LeuGlu: 5.569 ± 0.0
4.177LeuPhe: 4.177 ± 0.0
5.569LeuGly: 5.569 ± 0.0
2.785LeuHis: 2.785 ± 0.0
2.436LeuIle: 2.436 ± 0.0
5.221LeuLys: 5.221 ± 0.0
6.265LeuLeu: 6.265 ± 0.0
3.133LeuMet: 3.133 ± 0.0
3.481LeuAsn: 3.481 ± 0.0
5.569LeuPro: 5.569 ± 0.0
2.785LeuGln: 2.785 ± 0.0
5.221LeuArg: 5.221 ± 0.0
5.569LeuSer: 5.569 ± 0.0
6.961LeuThr: 6.961 ± 0.0
7.309LeuVal: 7.309 ± 0.0
1.044LeuTrp: 1.044 ± 0.0
2.785LeuTyr: 2.785 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.044MetAla: 1.044 ± 0.0
0.0MetCys: 0.0 ± 0.0
2.785MetAsp: 2.785 ± 0.0
1.74MetGlu: 1.74 ± 0.0
0.348MetPhe: 0.348 ± 0.0
1.044MetGly: 1.044 ± 0.0
1.044MetHis: 1.044 ± 0.0
1.044MetIle: 1.044 ± 0.0
1.044MetLys: 1.044 ± 0.0
1.74MetLeu: 1.74 ± 0.0
0.348MetMet: 0.348 ± 0.0
0.348MetAsn: 0.348 ± 0.0
1.74MetPro: 1.74 ± 0.0
1.044MetGln: 1.044 ± 0.0
1.392MetArg: 1.392 ± 0.0
1.392MetSer: 1.392 ± 0.0
1.044MetThr: 1.044 ± 0.0
1.74MetVal: 1.74 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.696MetTyr: 0.696 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
1.044AsnAla: 1.044 ± 0.0
1.392AsnCys: 1.392 ± 0.0
0.696AsnAsp: 0.696 ± 0.0
2.088AsnGlu: 2.088 ± 0.0
2.785AsnPhe: 2.785 ± 0.0
2.088AsnGly: 2.088 ± 0.0
1.74AsnHis: 1.74 ± 0.0
2.088AsnIle: 2.088 ± 0.0
1.392AsnLys: 1.392 ± 0.0
2.436AsnLeu: 2.436 ± 0.0
0.696AsnMet: 0.696 ± 0.0
1.044AsnAsn: 1.044 ± 0.0
2.436AsnPro: 2.436 ± 0.0
0.696AsnGln: 0.696 ± 0.0
2.088AsnArg: 2.088 ± 0.0
2.436AsnSer: 2.436 ± 0.0
2.785AsnThr: 2.785 ± 0.0
1.044AsnVal: 1.044 ± 0.0
0.696AsnTrp: 0.696 ± 0.0
1.392AsnTyr: 1.392 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.088ProAla: 2.088 ± 0.0
1.044ProCys: 1.044 ± 0.0
4.525ProAsp: 4.525 ± 0.0
5.917ProGlu: 5.917 ± 0.0
2.088ProPhe: 2.088 ± 0.0
5.221ProGly: 5.221 ± 0.0
0.696ProHis: 0.696 ± 0.0
3.133ProIle: 3.133 ± 0.0
2.785ProLys: 2.785 ± 0.0
3.481ProLeu: 3.481 ± 0.0
0.696ProMet: 0.696 ± 0.0
0.696ProAsn: 0.696 ± 0.0
2.785ProPro: 2.785 ± 0.0
2.088ProGln: 2.088 ± 0.0
2.088ProArg: 2.088 ± 0.0
2.785ProSer: 2.785 ± 0.0
3.481ProThr: 3.481 ± 0.0
3.829ProVal: 3.829 ± 0.0
0.696ProTrp: 0.696 ± 0.0
1.044ProTyr: 1.044 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.088GlnAla: 2.088 ± 0.0
1.044GlnCys: 1.044 ± 0.0
2.088GlnAsp: 2.088 ± 0.0
3.133GlnGlu: 3.133 ± 0.0
1.74GlnPhe: 1.74 ± 0.0
1.74GlnGly: 1.74 ± 0.0
0.348GlnHis: 0.348 ± 0.0
2.436GlnIle: 2.436 ± 0.0
2.785GlnLys: 2.785 ± 0.0
2.436GlnLeu: 2.436 ± 0.0
1.044GlnMet: 1.044 ± 0.0
1.74GlnAsn: 1.74 ± 0.0
1.74GlnPro: 1.74 ± 0.0
0.348GlnGln: 0.348 ± 0.0
1.74GlnArg: 1.74 ± 0.0
1.044GlnSer: 1.044 ± 0.0
2.436GlnThr: 2.436 ± 0.0
2.785GlnVal: 2.785 ± 0.0
0.696GlnTrp: 0.696 ± 0.0
0.696GlnTyr: 0.696 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.829ArgAla: 3.829 ± 0.0
0.696ArgCys: 0.696 ± 0.0
2.436ArgAsp: 2.436 ± 0.0
2.436ArgGlu: 2.436 ± 0.0
2.785ArgPhe: 2.785 ± 0.0
4.873ArgGly: 4.873 ± 0.0
1.74ArgHis: 1.74 ± 0.0
1.74ArgIle: 1.74 ± 0.0
3.481ArgLys: 3.481 ± 0.0
6.961ArgLeu: 6.961 ± 0.0
0.696ArgMet: 0.696 ± 0.0
1.392ArgAsn: 1.392 ± 0.0
3.133ArgPro: 3.133 ± 0.0
1.392ArgGln: 1.392 ± 0.0
2.785ArgArg: 2.785 ± 0.0
3.829ArgSer: 3.829 ± 0.0
3.829ArgThr: 3.829 ± 0.0
5.917ArgVal: 5.917 ± 0.0
1.74ArgTrp: 1.74 ± 0.0
3.133ArgTyr: 3.133 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.917SerAla: 5.917 ± 0.0
0.696SerCys: 0.696 ± 0.0
5.221SerAsp: 5.221 ± 0.0
2.785SerGlu: 2.785 ± 0.0
3.481SerPhe: 3.481 ± 0.0
5.917SerGly: 5.917 ± 0.0
2.436SerHis: 2.436 ± 0.0
3.133SerIle: 3.133 ± 0.0
2.436SerLys: 2.436 ± 0.0
6.613SerLeu: 6.613 ± 0.0
1.044SerMet: 1.044 ± 0.0
1.392SerAsn: 1.392 ± 0.0
3.829SerPro: 3.829 ± 0.0
1.74SerGln: 1.74 ± 0.0
5.221SerArg: 5.221 ± 0.0
5.917SerSer: 5.917 ± 0.0
4.525SerThr: 4.525 ± 0.0
4.873SerVal: 4.873 ± 0.0
1.74SerTrp: 1.74 ± 0.0
2.088SerTyr: 2.088 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.873ThrAla: 4.873 ± 0.0
1.392ThrCys: 1.392 ± 0.0
2.436ThrAsp: 2.436 ± 0.0
1.044ThrGlu: 1.044 ± 0.0
2.436ThrPhe: 2.436 ± 0.0
4.873ThrGly: 4.873 ± 0.0
1.392ThrHis: 1.392 ± 0.0
3.133ThrIle: 3.133 ± 0.0
3.133ThrLys: 3.133 ± 0.0
3.829ThrLeu: 3.829 ± 0.0
0.0ThrMet: 0.0 ± 0.0
3.829ThrAsn: 3.829 ± 0.0
3.481ThrPro: 3.481 ± 0.0
1.74ThrGln: 1.74 ± 0.0
3.133ThrArg: 3.133 ± 0.0
4.525ThrSer: 4.525 ± 0.0
2.785ThrThr: 2.785 ± 0.0
4.873ThrVal: 4.873 ± 0.0
0.0ThrTrp: 0.0 ± 0.0
2.785ThrTyr: 2.785 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.177ValAla: 4.177 ± 0.0
2.436ValCys: 2.436 ± 0.0
4.873ValAsp: 4.873 ± 0.0
4.525ValGlu: 4.525 ± 0.0
4.177ValPhe: 4.177 ± 0.0
7.658ValGly: 7.658 ± 0.0
2.785ValHis: 2.785 ± 0.0
2.436ValIle: 2.436 ± 0.0
3.829ValLys: 3.829 ± 0.0
4.525ValLeu: 4.525 ± 0.0
1.044ValMet: 1.044 ± 0.0
1.74ValAsn: 1.74 ± 0.0
4.525ValPro: 4.525 ± 0.0
2.436ValGln: 2.436 ± 0.0
3.481ValArg: 3.481 ± 0.0
4.525ValSer: 4.525 ± 0.0
4.525ValThr: 4.525 ± 0.0
3.133ValVal: 3.133 ± 0.0
1.044ValTrp: 1.044 ± 0.0
1.392ValTyr: 1.392 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.74TrpAla: 1.74 ± 0.0
0.0TrpCys: 0.0 ± 0.0
1.74TrpAsp: 1.74 ± 0.0
2.785TrpGlu: 2.785 ± 0.0
1.044TrpPhe: 1.044 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.348TrpHis: 0.348 ± 0.0
0.696TrpIle: 0.696 ± 0.0
1.74TrpLys: 1.74 ± 0.0
2.436TrpLeu: 2.436 ± 0.0
1.044TrpMet: 1.044 ± 0.0
1.392TrpAsn: 1.392 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.348TrpGln: 0.348 ± 0.0
0.696TrpArg: 0.696 ± 0.0
2.088TrpSer: 2.088 ± 0.0
1.74TrpThr: 1.74 ± 0.0
1.74TrpVal: 1.74 ± 0.0
1.392TrpTrp: 1.392 ± 0.0
0.348TrpTyr: 0.348 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.392TyrAla: 1.392 ± 0.0
0.696TyrCys: 0.696 ± 0.0
2.785TyrAsp: 2.785 ± 0.0
1.74TyrGlu: 1.74 ± 0.0
2.785TyrPhe: 2.785 ± 0.0
2.088TyrGly: 2.088 ± 0.0
0.348TyrHis: 0.348 ± 0.0
1.74TyrIle: 1.74 ± 0.0
2.088TyrLys: 2.088 ± 0.0
4.873TyrLeu: 4.873 ± 0.0
0.348TyrMet: 0.348 ± 0.0
0.348TyrAsn: 0.348 ± 0.0
2.088TyrPro: 2.088 ± 0.0
1.044TyrGln: 1.044 ± 0.0
2.785TyrArg: 2.785 ± 0.0
2.785TyrSer: 2.785 ± 0.0
0.696TyrThr: 0.696 ± 0.0
1.74TyrVal: 1.74 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
1.392TyrTyr: 1.392 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2874 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski