White sturgeon adenovirus 1

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Ichtadenovirus; Sturgeon ichtadenovirus A

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 48 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8PIX1|A0A4P8PIX1_9ADEN PVI OS=White sturgeon adenovirus 1 OX=2580388 PE=4 SV=1
MM1 pKa = 7.76LLEE4 pKa = 3.89FLEE7 pKa = 4.75AFVEE11 pKa = 4.97AIGSFLAYY19 pKa = 9.64ICFCEE24 pKa = 4.25EE25 pKa = 3.71ASLLCIEE32 pKa = 4.46VSEE35 pKa = 4.25EE36 pKa = 3.69QFEE39 pKa = 4.55NFVKK43 pKa = 10.66FCVEE47 pKa = 3.78QTLLTLFITLFYY59 pKa = 10.52ILRR62 pKa = 11.84DD63 pKa = 3.31GWW65 pKa = 3.6

Molecular weight: 7.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8PQV5|A0A4P8PQV5_9ADEN ORF1 OS=White sturgeon adenovirus 1 OX=2580388 PE=4 SV=1
MM1 pKa = 7.44YY2 pKa = 9.16STGDD6 pKa = 3.25STGWGRR12 pKa = 11.84RR13 pKa = 11.84VSQIRR18 pKa = 11.84FSFQIFF24 pKa = 3.19

Molecular weight: 2.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

48

0

48

14671

24

1166

305.6

34.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.855 ± 0.228

2.488 ± 0.269

5.323 ± 0.178

5.392 ± 0.343

4.792 ± 0.209

5.617 ± 0.336

2.331 ± 0.192

5.61 ± 0.257

5.398 ± 0.354

8.636 ± 0.273

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.74 ± 0.138

6.032 ± 0.3

5.712 ± 0.315

4.015 ± 0.174

4.69 ± 0.339

7.232 ± 0.228

6.4 ± 0.277

5.916 ± 0.205

1.254 ± 0.117

4.567 ± 0.262
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski