Vibrio phage ICP1_2006_D

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 5.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 227 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F1D245|F1D245_9CAUD Uncharacterized protein OS=Vibrio phage ICP1_2006_D OX=979532 GN=TUST1-191_00715 PE=4 SV=1
MM1 pKa = 7.63LYY3 pKa = 10.5DD4 pKa = 3.49VYY6 pKa = 10.97RR7 pKa = 11.84VDD9 pKa = 4.42RR10 pKa = 11.84HH11 pKa = 5.55PHH13 pKa = 6.54DD14 pKa = 4.06IDD16 pKa = 5.12DD17 pKa = 4.27VVEE20 pKa = 4.19TCIGVDD26 pKa = 3.67LSDD29 pKa = 4.41MEE31 pKa = 4.61VKK33 pKa = 10.76DD34 pKa = 6.27LIATQNGYY42 pKa = 10.73LEE44 pKa = 4.28IFGVDD49 pKa = 3.55SEE51 pKa = 4.61GLVYY55 pKa = 10.91DD56 pKa = 4.35KK57 pKa = 11.4VGEE60 pKa = 4.06

Molecular weight: 6.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F1D206|F1D206_9CAUD Uncharacterized protein OS=Vibrio phage ICP1_2006_D OX=979532 GN=TUST1-191_00520 PE=4 SV=1
MM1 pKa = 7.54NNLKK5 pKa = 10.34QKK7 pKa = 9.41WNNLAKK13 pKa = 9.06WQKK16 pKa = 10.16ISAGVIGVVVAIYY29 pKa = 8.12MASYY33 pKa = 10.63LYY35 pKa = 10.82GKK37 pKa = 7.86TVFNPQQCYY46 pKa = 10.14ALYY49 pKa = 10.72GNRR52 pKa = 11.84LFTAASLQALHH63 pKa = 6.37VNSVGTTLPPIIKK76 pKa = 9.89HH77 pKa = 5.16GVVNGAKK84 pKa = 9.9KK85 pKa = 10.26RR86 pKa = 11.84IHH88 pKa = 5.63EE89 pKa = 4.56CYY91 pKa = 9.66MEE93 pKa = 4.54GKK95 pKa = 10.12

Molecular weight: 10.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

227

0

227

36884

33

1076

162.5

18.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.853 ± 0.198

1.871 ± 0.108

6.515 ± 0.14

7.844 ± 0.163

4.373 ± 0.11

6.201 ± 0.15

1.963 ± 0.074

6.333 ± 0.134

8.06 ± 0.211

8.47 ± 0.166

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.565 ± 0.086

5.271 ± 0.113

2.871 ± 0.097

3.403 ± 0.106

4.27 ± 0.134

6.442 ± 0.13

5.585 ± 0.154

6.721 ± 0.164

1.513 ± 0.082

4.877 ± 0.169
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski