Acidovorax caeni

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3855 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I7JTX5|A0A1I7JTX5_9BURK Xanthine dehydrogenase molybdenum binding subunit apoprotein OS=Acidovorax caeni OX=343013 GN=SAMN04489707_10312 PE=4 SV=1
MM1 pKa = 7.23SAVAEE6 pKa = 4.21NVTTDD11 pKa = 3.43MPTPIHH17 pKa = 5.84FTDD20 pKa = 3.33SAAAKK25 pKa = 10.02VADD28 pKa = 5.45LIAEE32 pKa = 4.31EE33 pKa = 4.82GNPDD37 pKa = 2.99LKK39 pKa = 11.13LRR41 pKa = 11.84VFVQGGGCSGFQYY54 pKa = 10.94GFTFDD59 pKa = 5.34EE60 pKa = 4.5ITNDD64 pKa = 4.71DD65 pKa = 4.31DD66 pKa = 3.88TTMTKK71 pKa = 10.62NGVSLLIDD79 pKa = 3.54AMSYY83 pKa = 10.32QYY85 pKa = 11.5LVGAEE90 pKa = 3.79IDD92 pKa = 3.91YY93 pKa = 11.36KK94 pKa = 11.19EE95 pKa = 4.67DD96 pKa = 3.23LQGAQFVIKK105 pKa = 10.42NPNAEE110 pKa = 4.39TTCGCGSSFSVV121 pKa = 3.54

Molecular weight: 12.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I7KRR0|A0A1I7KRR0_9BURK ABC-2 type transport system permease protein OS=Acidovorax caeni OX=343013 GN=SAMN04489707_10683 PE=4 SV=1
MM1 pKa = 6.98STITSFINLAAMRR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84AGGGLAQSMAWAFGLLWRR34 pKa = 11.84SHH36 pKa = 4.11QSARR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84NQKK46 pKa = 8.63TNAPHH51 pKa = 6.45AA52 pKa = 4.56

Molecular weight: 5.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3855

0

3855

1245875

29

3425

323.2

35.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.485 ± 0.062

0.991 ± 0.016

4.99 ± 0.025

5.203 ± 0.039

3.306 ± 0.024

8.174 ± 0.038

2.422 ± 0.024

3.967 ± 0.028

3.13 ± 0.035

11.044 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.389 ± 0.017

2.434 ± 0.028

5.376 ± 0.033

4.824 ± 0.033

6.972 ± 0.039

4.955 ± 0.027

5.074 ± 0.031

7.469 ± 0.037

1.587 ± 0.019

2.21 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski