Amino acid dipepetide frequency for Bluegill picornavirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.996AlaAla: 5.996 ± 0.0
1.285AlaCys: 1.285 ± 0.0
5.139AlaAsp: 5.139 ± 0.0
2.57AlaGlu: 2.57 ± 0.0
2.57AlaPhe: 2.57 ± 0.0
5.139AlaGly: 5.139 ± 0.0
1.285AlaHis: 1.285 ± 0.0
4.283AlaIle: 4.283 ± 0.0
4.283AlaLys: 4.283 ± 0.0
9.422AlaLeu: 9.422 ± 0.0
2.57AlaMet: 2.57 ± 0.0
2.57AlaAsn: 2.57 ± 0.0
2.998AlaPro: 2.998 ± 0.0
1.285AlaGln: 1.285 ± 0.0
3.426AlaArg: 3.426 ± 0.0
2.57AlaSer: 2.57 ± 0.0
4.283AlaThr: 4.283 ± 0.0
8.137AlaVal: 8.137 ± 0.0
0.428AlaTrp: 0.428 ± 0.0
4.283AlaTyr: 4.283 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.857CysAsp: 0.857 ± 0.0
0.428CysGlu: 0.428 ± 0.0
0.0CysPhe: 0.0 ± 0.0
2.998CysGly: 2.998 ± 0.0
0.0CysHis: 0.0 ± 0.0
1.285CysIle: 1.285 ± 0.0
0.428CysLys: 0.428 ± 0.0
0.857CysLeu: 0.857 ± 0.0
0.428CysMet: 0.428 ± 0.0
0.428CysAsn: 0.428 ± 0.0
0.857CysPro: 0.857 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
0.857CysThr: 0.857 ± 0.0
2.57CysVal: 2.57 ± 0.0
0.857CysTrp: 0.857 ± 0.0
0.428CysTyr: 0.428 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.57AspAla: 2.57 ± 0.0
1.285AspCys: 1.285 ± 0.0
2.141AspAsp: 2.141 ± 0.0
6.424AspGlu: 6.424 ± 0.0
2.57AspPhe: 2.57 ± 0.0
4.283AspGly: 4.283 ± 0.0
0.857AspHis: 0.857 ± 0.0
3.426AspIle: 3.426 ± 0.0
2.57AspLys: 2.57 ± 0.0
6.852AspLeu: 6.852 ± 0.0
2.57AspMet: 2.57 ± 0.0
2.141AspAsn: 2.141 ± 0.0
2.141AspPro: 2.141 ± 0.0
2.57AspGln: 2.57 ± 0.0
2.141AspArg: 2.141 ± 0.0
4.711AspSer: 4.711 ± 0.0
3.854AspThr: 3.854 ± 0.0
5.567AspVal: 5.567 ± 0.0
1.285AspTrp: 1.285 ± 0.0
1.713AspTyr: 1.713 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.283GluAla: 4.283 ± 0.0
0.428GluCys: 0.428 ± 0.0
5.139GluAsp: 5.139 ± 0.0
5.996GluGlu: 5.996 ± 0.0
3.426GluPhe: 3.426 ± 0.0
4.283GluGly: 4.283 ± 0.0
1.713GluHis: 1.713 ± 0.0
2.57GluIle: 2.57 ± 0.0
5.139GluLys: 5.139 ± 0.0
3.854GluLeu: 3.854 ± 0.0
1.713GluMet: 1.713 ± 0.0
2.141GluAsn: 2.141 ± 0.0
2.141GluPro: 2.141 ± 0.0
3.426GluGln: 3.426 ± 0.0
2.998GluArg: 2.998 ± 0.0
2.141GluSer: 2.141 ± 0.0
2.998GluThr: 2.998 ± 0.0
4.711GluVal: 4.711 ± 0.0
1.713GluTrp: 1.713 ± 0.0
1.713GluTyr: 1.713 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
2.57PheAla: 2.57 ± 0.0
0.857PheCys: 0.857 ± 0.0
3.854PheAsp: 3.854 ± 0.0
1.713PheGlu: 1.713 ± 0.0
1.285PhePhe: 1.285 ± 0.0
0.857PheGly: 0.857 ± 0.0
0.857PheHis: 0.857 ± 0.0
0.428PheIle: 0.428 ± 0.0
1.285PheLys: 1.285 ± 0.0
3.854PheLeu: 3.854 ± 0.0
1.285PheMet: 1.285 ± 0.0
2.141PheAsn: 2.141 ± 0.0
1.285PhePro: 1.285 ± 0.0
1.713PheGln: 1.713 ± 0.0
3.426PheArg: 3.426 ± 0.0
1.285PheSer: 1.285 ± 0.0
2.57PheThr: 2.57 ± 0.0
3.854PheVal: 3.854 ± 0.0
0.857PheTrp: 0.857 ± 0.0
3.426PheTyr: 3.426 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.854GlyAla: 3.854 ± 0.0
0.428GlyCys: 0.428 ± 0.0
5.567GlyAsp: 5.567 ± 0.0
2.998GlyGlu: 2.998 ± 0.0
2.57GlyPhe: 2.57 ± 0.0
3.426GlyGly: 3.426 ± 0.0
0.857GlyHis: 0.857 ± 0.0
2.57GlyIle: 2.57 ± 0.0
4.711GlyLys: 4.711 ± 0.0
6.424GlyLeu: 6.424 ± 0.0
3.854GlyMet: 3.854 ± 0.0
1.713GlyAsn: 1.713 ± 0.0
1.713GlyPro: 1.713 ± 0.0
3.854GlyGln: 3.854 ± 0.0
3.426GlyArg: 3.426 ± 0.0
5.567GlySer: 5.567 ± 0.0
2.141GlyThr: 2.141 ± 0.0
2.57GlyVal: 2.57 ± 0.0
1.285GlyTrp: 1.285 ± 0.0
1.713GlyTyr: 1.713 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.713HisAla: 1.713 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.428HisAsp: 0.428 ± 0.0
1.713HisGlu: 1.713 ± 0.0
1.713HisPhe: 1.713 ± 0.0
0.857HisGly: 0.857 ± 0.0
0.857HisHis: 0.857 ± 0.0
1.713HisIle: 1.713 ± 0.0
0.857HisLys: 0.857 ± 0.0
2.998HisLeu: 2.998 ± 0.0
0.857HisMet: 0.857 ± 0.0
1.285HisAsn: 1.285 ± 0.0
0.428HisPro: 0.428 ± 0.0
0.857HisGln: 0.857 ± 0.0
0.857HisArg: 0.857 ± 0.0
0.428HisSer: 0.428 ± 0.0
1.285HisThr: 1.285 ± 0.0
1.285HisVal: 1.285 ± 0.0
0.428HisTrp: 0.428 ± 0.0
0.428HisTyr: 0.428 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.854IleAla: 3.854 ± 0.0
0.428IleCys: 0.428 ± 0.0
3.426IleAsp: 3.426 ± 0.0
3.426IleGlu: 3.426 ± 0.0
2.141IlePhe: 2.141 ± 0.0
2.998IleGly: 2.998 ± 0.0
1.285IleHis: 1.285 ± 0.0
1.285IleIle: 1.285 ± 0.0
1.285IleLys: 1.285 ± 0.0
4.711IleLeu: 4.711 ± 0.0
0.857IleMet: 0.857 ± 0.0
2.141IleAsn: 2.141 ± 0.0
1.713IlePro: 1.713 ± 0.0
3.426IleGln: 3.426 ± 0.0
2.998IleArg: 2.998 ± 0.0
3.426IleSer: 3.426 ± 0.0
5.567IleThr: 5.567 ± 0.0
5.139IleVal: 5.139 ± 0.0
0.857IleTrp: 0.857 ± 0.0
1.285IleTyr: 1.285 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
3.426LysAla: 3.426 ± 0.0
0.428LysCys: 0.428 ± 0.0
3.426LysAsp: 3.426 ± 0.0
3.426LysGlu: 3.426 ± 0.0
2.141LysPhe: 2.141 ± 0.0
2.57LysGly: 2.57 ± 0.0
1.713LysHis: 1.713 ± 0.0
2.998LysIle: 2.998 ± 0.0
1.285LysLys: 1.285 ± 0.0
4.711LysLeu: 4.711 ± 0.0
0.857LysMet: 0.857 ± 0.0
0.857LysAsn: 0.857 ± 0.0
1.285LysPro: 1.285 ± 0.0
3.426LysGln: 3.426 ± 0.0
2.998LysArg: 2.998 ± 0.0
3.426LysSer: 3.426 ± 0.0
7.281LysThr: 7.281 ± 0.0
5.996LysVal: 5.996 ± 0.0
0.428LysTrp: 0.428 ± 0.0
2.141LysTyr: 2.141 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
8.565LeuAla: 8.565 ± 0.0
0.428LeuCys: 0.428 ± 0.0
4.283LeuAsp: 4.283 ± 0.0
5.567LeuGlu: 5.567 ± 0.0
2.141LeuPhe: 2.141 ± 0.0
4.283LeuGly: 4.283 ± 0.0
2.141LeuHis: 2.141 ± 0.0
3.426LeuIle: 3.426 ± 0.0
8.137LeuLys: 8.137 ± 0.0
8.565LeuLeu: 8.565 ± 0.0
3.854LeuMet: 3.854 ± 0.0
4.283LeuAsn: 4.283 ± 0.0
3.426LeuPro: 3.426 ± 0.0
4.283LeuGln: 4.283 ± 0.0
3.854LeuArg: 3.854 ± 0.0
4.283LeuSer: 4.283 ± 0.0
8.994LeuThr: 8.994 ± 0.0
6.852LeuVal: 6.852 ± 0.0
0.428LeuTrp: 0.428 ± 0.0
3.426LeuTyr: 3.426 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
4.283MetAla: 4.283 ± 0.0
0.857MetCys: 0.857 ± 0.0
1.285MetAsp: 1.285 ± 0.0
1.713MetGlu: 1.713 ± 0.0
0.428MetPhe: 0.428 ± 0.0
2.57MetGly: 2.57 ± 0.0
0.857MetHis: 0.857 ± 0.0
1.713MetIle: 1.713 ± 0.0
3.426MetLys: 3.426 ± 0.0
1.285MetLeu: 1.285 ± 0.0
1.285MetMet: 1.285 ± 0.0
0.857MetAsn: 0.857 ± 0.0
0.857MetPro: 0.857 ± 0.0
1.285MetGln: 1.285 ± 0.0
4.283MetArg: 4.283 ± 0.0
2.141MetSer: 2.141 ± 0.0
3.426MetThr: 3.426 ± 0.0
0.857MetVal: 0.857 ± 0.0
1.713MetTrp: 1.713 ± 0.0
1.713MetTyr: 1.713 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.57AsnAla: 2.57 ± 0.0
1.713AsnCys: 1.713 ± 0.0
1.713AsnAsp: 1.713 ± 0.0
1.713AsnGlu: 1.713 ± 0.0
1.285AsnPhe: 1.285 ± 0.0
1.713AsnGly: 1.713 ± 0.0
0.857AsnHis: 0.857 ± 0.0
3.426AsnIle: 3.426 ± 0.0
1.713AsnLys: 1.713 ± 0.0
5.996AsnLeu: 5.996 ± 0.0
1.713AsnMet: 1.713 ± 0.0
2.57AsnAsn: 2.57 ± 0.0
3.854AsnPro: 3.854 ± 0.0
2.57AsnGln: 2.57 ± 0.0
0.857AsnArg: 0.857 ± 0.0
2.57AsnSer: 2.57 ± 0.0
4.283AsnThr: 4.283 ± 0.0
2.998AsnVal: 2.998 ± 0.0
0.428AsnTrp: 0.428 ± 0.0
0.857AsnTyr: 0.857 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.141ProAla: 2.141 ± 0.0
0.428ProCys: 0.428 ± 0.0
2.998ProAsp: 2.998 ± 0.0
2.57ProGlu: 2.57 ± 0.0
2.141ProPhe: 2.141 ± 0.0
2.998ProGly: 2.998 ± 0.0
0.857ProHis: 0.857 ± 0.0
3.426ProIle: 3.426 ± 0.0
1.713ProLys: 1.713 ± 0.0
1.713ProLeu: 1.713 ± 0.0
1.285ProMet: 1.285 ± 0.0
2.57ProAsn: 2.57 ± 0.0
1.713ProPro: 1.713 ± 0.0
0.857ProGln: 0.857 ± 0.0
2.141ProArg: 2.141 ± 0.0
1.713ProSer: 1.713 ± 0.0
1.713ProThr: 1.713 ± 0.0
4.283ProVal: 4.283 ± 0.0
0.0ProTrp: 0.0 ± 0.0
1.285ProTyr: 1.285 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.998GlnAla: 2.998 ± 0.0
0.428GlnCys: 0.428 ± 0.0
1.713GlnAsp: 1.713 ± 0.0
4.283GlnGlu: 4.283 ± 0.0
1.285GlnPhe: 1.285 ± 0.0
5.139GlnGly: 5.139 ± 0.0
0.857GlnHis: 0.857 ± 0.0
2.998GlnIle: 2.998 ± 0.0
2.57GlnLys: 2.57 ± 0.0
2.141GlnLeu: 2.141 ± 0.0
2.141GlnMet: 2.141 ± 0.0
2.141GlnAsn: 2.141 ± 0.0
1.285GlnPro: 1.285 ± 0.0
2.57GlnGln: 2.57 ± 0.0
2.57GlnArg: 2.57 ± 0.0
2.141GlnSer: 2.141 ± 0.0
1.713GlnThr: 1.713 ± 0.0
2.57GlnVal: 2.57 ± 0.0
0.428GlnTrp: 0.428 ± 0.0
1.285GlnTyr: 1.285 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
4.711ArgAla: 4.711 ± 0.0
0.0ArgCys: 0.0 ± 0.0
3.854ArgAsp: 3.854 ± 0.0
2.57ArgGlu: 2.57 ± 0.0
2.998ArgPhe: 2.998 ± 0.0
1.285ArgGly: 1.285 ± 0.0
0.857ArgHis: 0.857 ± 0.0
2.998ArgIle: 2.998 ± 0.0
0.857ArgLys: 0.857 ± 0.0
7.281ArgLeu: 7.281 ± 0.0
2.57ArgMet: 2.57 ± 0.0
3.854ArgAsn: 3.854 ± 0.0
1.713ArgPro: 1.713 ± 0.0
1.285ArgGln: 1.285 ± 0.0
1.285ArgArg: 1.285 ± 0.0
2.998ArgSer: 2.998 ± 0.0
1.713ArgThr: 1.713 ± 0.0
5.996ArgVal: 5.996 ± 0.0
0.428ArgTrp: 0.428 ± 0.0
1.713ArgTyr: 1.713 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
4.711SerAla: 4.711 ± 0.0
0.857SerCys: 0.857 ± 0.0
3.426SerAsp: 3.426 ± 0.0
3.854SerGlu: 3.854 ± 0.0
2.57SerPhe: 2.57 ± 0.0
3.426SerGly: 3.426 ± 0.0
0.857SerHis: 0.857 ± 0.0
2.57SerIle: 2.57 ± 0.0
2.998SerLys: 2.998 ± 0.0
5.139SerLeu: 5.139 ± 0.0
1.285SerMet: 1.285 ± 0.0
4.711SerAsn: 4.711 ± 0.0
3.426SerPro: 3.426 ± 0.0
1.713SerGln: 1.713 ± 0.0
2.998SerArg: 2.998 ± 0.0
2.57SerSer: 2.57 ± 0.0
3.854SerThr: 3.854 ± 0.0
2.141SerVal: 2.141 ± 0.0
0.428SerTrp: 0.428 ± 0.0
0.857SerTyr: 0.857 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.283ThrAla: 4.283 ± 0.0
1.285ThrCys: 1.285 ± 0.0
4.283ThrAsp: 4.283 ± 0.0
3.426ThrGlu: 3.426 ± 0.0
3.426ThrPhe: 3.426 ± 0.0
4.711ThrGly: 4.711 ± 0.0
0.857ThrHis: 0.857 ± 0.0
3.854ThrIle: 3.854 ± 0.0
4.283ThrLys: 4.283 ± 0.0
6.852ThrLeu: 6.852 ± 0.0
2.57ThrMet: 2.57 ± 0.0
3.854ThrAsn: 3.854 ± 0.0
3.426ThrPro: 3.426 ± 0.0
2.57ThrGln: 2.57 ± 0.0
3.426ThrArg: 3.426 ± 0.0
5.567ThrSer: 5.567 ± 0.0
5.996ThrThr: 5.996 ± 0.0
4.283ThrVal: 4.283 ± 0.0
1.285ThrTrp: 1.285 ± 0.0
1.285ThrTyr: 1.285 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
8.565ValAla: 8.565 ± 0.0
0.857ValCys: 0.857 ± 0.0
5.139ValAsp: 5.139 ± 0.0
5.567ValGlu: 5.567 ± 0.0
2.57ValPhe: 2.57 ± 0.0
5.139ValGly: 5.139 ± 0.0
3.426ValHis: 3.426 ± 0.0
3.426ValIle: 3.426 ± 0.0
4.711ValLys: 4.711 ± 0.0
5.996ValLeu: 5.996 ± 0.0
2.57ValMet: 2.57 ± 0.0
3.426ValAsn: 3.426 ± 0.0
2.998ValPro: 2.998 ± 0.0
3.426ValGln: 3.426 ± 0.0
2.998ValArg: 2.998 ± 0.0
4.711ValSer: 4.711 ± 0.0
3.854ValThr: 3.854 ± 0.0
6.852ValVal: 6.852 ± 0.0
0.0ValTrp: 0.0 ± 0.0
2.57ValTyr: 2.57 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.428TrpAla: 0.428 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.857TrpAsp: 0.857 ± 0.0
1.285TrpGlu: 1.285 ± 0.0
1.285TrpPhe: 1.285 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.713TrpIle: 1.713 ± 0.0
0.857TrpLys: 0.857 ± 0.0
0.428TrpLeu: 0.428 ± 0.0
0.857TrpMet: 0.857 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.857TrpGln: 0.857 ± 0.0
1.713TrpArg: 1.713 ± 0.0
0.0TrpSer: 0.0 ± 0.0
2.141TrpThr: 2.141 ± 0.0
0.428TrpVal: 0.428 ± 0.0
0.428TrpTrp: 0.428 ± 0.0
0.428TrpTyr: 0.428 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.998TyrAla: 2.998 ± 0.0
1.285TyrCys: 1.285 ± 0.0
2.141TyrAsp: 2.141 ± 0.0
1.713TyrGlu: 1.713 ± 0.0
0.857TyrPhe: 0.857 ± 0.0
2.57TyrGly: 2.57 ± 0.0
0.0TyrHis: 0.0 ± 0.0
2.141TyrIle: 2.141 ± 0.0
1.713TyrLys: 1.713 ± 0.0
2.141TyrLeu: 2.141 ± 0.0
1.285TyrMet: 1.285 ± 0.0
1.713TyrAsn: 1.713 ± 0.0
1.285TyrPro: 1.285 ± 0.0
1.285TyrGln: 1.285 ± 0.0
2.57TyrArg: 2.57 ± 0.0
2.141TyrSer: 2.141 ± 0.0
2.998TyrThr: 2.998 ± 0.0
1.713TyrVal: 1.713 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
2.141TyrTyr: 2.141 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2336 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski