Gammapapillomavirus 12

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2ALT7|A0A2D2ALT7_9PAPI ^E4 (Fragment) OS=Gammapapillomavirus 12 OX=1513257 GN=^E4 PE=4 SV=1
MM1 pKa = 7.34SGSIRR6 pKa = 11.84RR7 pKa = 11.84KK8 pKa = 9.18RR9 pKa = 11.84ASPTDD14 pKa = 3.76LYY16 pKa = 10.49KK17 pKa = 11.02ACVQGADD24 pKa = 4.46CISDD28 pKa = 3.46VKK30 pKa = 11.31NKK32 pKa = 10.16FEE34 pKa = 4.03QTTIADD40 pKa = 3.73WLLKK44 pKa = 10.4IFGSLVYY51 pKa = 10.34FGNLGIGTGKK61 pKa = 10.78GSGGSLGFRR70 pKa = 11.84PLGEE74 pKa = 4.0GVGAGKK80 pKa = 9.56PITTGAIKK88 pKa = 9.89PAVAVEE94 pKa = 3.94TLPVDD99 pKa = 3.78VFAIPSEE106 pKa = 3.95ASAIVPLAEE115 pKa = 5.05GGPDD119 pKa = 3.33LNVFTTDD126 pKa = 3.32GGPGLGAEE134 pKa = 4.46EE135 pKa = 4.39IEE137 pKa = 5.26LYY139 pKa = 10.41TITDD143 pKa = 3.35QTVDD147 pKa = 3.22GDD149 pKa = 4.7SIGGNPNIVTNEE161 pKa = 3.83RR162 pKa = 11.84GVPAVLDD169 pKa = 3.71VQPTPEE175 pKa = 4.65RR176 pKa = 11.84PPQVLYY182 pKa = 11.03DD183 pKa = 3.64PTIDD187 pKa = 2.95ATAQIRR193 pKa = 11.84IVTSDD198 pKa = 3.33PTLTQDD204 pKa = 3.11TNIFVDD210 pKa = 4.58PYY212 pKa = 10.64VGGEE216 pKa = 3.88IVGTGSRR223 pKa = 11.84FEE225 pKa = 4.89EE226 pKa = 4.28IPLDD230 pKa = 4.04EE231 pKa = 4.34FTLGQFEE238 pKa = 4.61IEE240 pKa = 4.18EE241 pKa = 4.46SPITSTPTEE250 pKa = 3.99RR251 pKa = 11.84LDD253 pKa = 3.46NAVNRR258 pKa = 11.84VRR260 pKa = 11.84GFYY263 pKa = 10.54NRR265 pKa = 11.84LIRR268 pKa = 11.84QVPVTDD274 pKa = 4.15PVFLQQPSRR283 pKa = 11.84LVQFEE288 pKa = 4.47YY289 pKa = 10.88EE290 pKa = 4.43NPAFDD295 pKa = 5.75DD296 pKa = 4.2DD297 pKa = 4.34VSLTFEE303 pKa = 4.65RR304 pKa = 11.84DD305 pKa = 3.12LAAVTAAPHH314 pKa = 6.63EE315 pKa = 4.57DD316 pKa = 3.18FADD319 pKa = 3.38IVKK322 pKa = 10.67LSRR325 pKa = 11.84PEE327 pKa = 3.94LSEE330 pKa = 4.05SVPGVVRR337 pKa = 11.84VSRR340 pKa = 11.84LGEE343 pKa = 4.12TNTITTRR350 pKa = 11.84SGTTIGQKK358 pKa = 7.9VHH360 pKa = 6.95FYY362 pKa = 11.02YY363 pKa = 10.68DD364 pKa = 2.71ISTIQEE370 pKa = 3.87AEE372 pKa = 4.13NIEE375 pKa = 4.23LQTLGEE381 pKa = 4.27HH382 pKa = 6.45TGTSTIVDD390 pKa = 5.02DD391 pKa = 4.55ILASTIVDD399 pKa = 3.66PVNNADD405 pKa = 3.85VGISEE410 pKa = 5.81DD411 pKa = 3.63NLLDD415 pKa = 3.62TFAEE419 pKa = 4.49DD420 pKa = 3.74FNNAHH425 pKa = 6.9LVLQAAGNEE434 pKa = 4.17DD435 pKa = 4.04EE436 pKa = 6.0DD437 pKa = 4.02IVSIPLLPPGAALKK451 pKa = 10.92LFVADD456 pKa = 3.66VGDD459 pKa = 4.17GLFVSYY465 pKa = 8.44PTDD468 pKa = 3.82TIHH471 pKa = 8.08DD472 pKa = 3.79ITIQLPDD479 pKa = 4.38GLPIGPSYY487 pKa = 10.94YY488 pKa = 10.8VGVDD492 pKa = 2.73NDD494 pKa = 4.44FYY496 pKa = 11.31LHH498 pKa = 7.23PSLIPKK504 pKa = 9.77KK505 pKa = 9.65KK506 pKa = 9.47RR507 pKa = 11.84RR508 pKa = 11.84RR509 pKa = 11.84LEE511 pKa = 3.84YY512 pKa = 10.83YY513 pKa = 10.02FF514 pKa = 5.21

Molecular weight: 55.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2ALT7|A0A2D2ALT7_9PAPI ^E4 (Fragment) OS=Gammapapillomavirus 12 OX=1513257 GN=^E4 PE=4 SV=1
SS1 pKa = 7.02IKK3 pKa = 10.3IKK5 pKa = 10.84LFLPLCLASQGLFPSLRR22 pKa = 11.84RR23 pKa = 11.84SLSPPPTPHH32 pKa = 6.9PHH34 pKa = 6.16RR35 pKa = 11.84KK36 pKa = 8.54SLEE39 pKa = 4.08RR40 pKa = 11.84EE41 pKa = 4.12GEE43 pKa = 4.09KK44 pKa = 10.19PRR46 pKa = 11.84RR47 pKa = 11.84TPTPNRR53 pKa = 11.84PPRR56 pKa = 11.84PTLNFDD62 pKa = 4.51EE63 pKa = 6.06DD64 pKa = 4.17DD65 pKa = 4.15EE66 pKa = 4.74NNKK69 pKa = 10.02EE70 pKa = 4.01NLPPPEE76 pKa = 4.3YY77 pKa = 10.59EE78 pKa = 4.31EE79 pKa = 4.26EE80 pKa = 4.17QQGAATTLHH89 pKa = 5.28QLLRR93 pKa = 11.84KK94 pKa = 9.48WEE96 pKa = 4.05VEE98 pKa = 3.4LDD100 pKa = 3.42RR101 pKa = 11.84FRR103 pKa = 11.84DD104 pKa = 3.85TVIQDD109 pKa = 3.48LDD111 pKa = 3.65AFKK114 pKa = 10.88KK115 pKa = 10.56RR116 pKa = 11.84LGIRR120 pKa = 11.84HH121 pKa = 6.09

Molecular weight: 14.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2379

92

599

339.9

38.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.557 ± 0.612

2.522 ± 0.956

6.389 ± 0.67

6.81 ± 0.51

4.75 ± 0.47

5.591 ± 1.194

1.765 ± 0.31

5.002 ± 0.718

5.633 ± 0.921

9.332 ± 0.45

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.429 ± 0.47

5.212 ± 0.522

5.717 ± 1.012

3.993 ± 0.23

5.591 ± 0.678

6.726 ± 0.477

6.011 ± 0.692

6.053 ± 0.73

1.303 ± 0.293

3.615 ± 0.35
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski