Ferroplasma acidarmanus fer1

Taxonomy: cellular organisms; Archaea; Candidatus Thermoplasmatota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma; Ferroplasma acidarmanus

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1927 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S0ALG4|S0ALG4_FERAC MFS domain-containing protein OS=Ferroplasma acidarmanus fer1 OX=333146 GN=FACI_IFERC00001G0203 PE=4 SV=1
MM1 pKa = 7.22NVDD4 pKa = 4.49DD5 pKa = 6.05LFIYY9 pKa = 9.72DD10 pKa = 4.49LKK12 pKa = 11.0YY13 pKa = 11.18GKK15 pKa = 10.82LNGQLINGEE24 pKa = 4.52FYY26 pKa = 10.74AIDD29 pKa = 4.05GEE31 pKa = 4.58YY32 pKa = 10.15MNEE35 pKa = 4.03DD36 pKa = 3.13LPGILEE42 pKa = 4.13RR43 pKa = 11.84LL44 pKa = 3.63

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S0AQ34|S0AQ34_FERAC DNA-binding protein OS=Ferroplasma acidarmanus fer1 OX=333146 GN=FACI_IFERC00001G0299 PE=4 SV=1
MM1 pKa = 7.59SKK3 pKa = 10.63NKK5 pKa = 9.68PLGKK9 pKa = 10.01KK10 pKa = 8.82IRR12 pKa = 11.84LMKK15 pKa = 10.24HH16 pKa = 4.57VNSNRR21 pKa = 11.84RR22 pKa = 11.84VPGWVMMKK30 pKa = 9.4TDD32 pKa = 4.22RR33 pKa = 11.84KK34 pKa = 8.14MTQNPKK40 pKa = 8.8RR41 pKa = 11.84KK42 pKa = 8.26NWRR45 pKa = 11.84RR46 pKa = 11.84SNLKK50 pKa = 10.1LL51 pKa = 3.65

Molecular weight: 6.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1927

0

1927

560709

29

2061

291.0

32.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.929 ± 0.061

0.605 ± 0.017

5.412 ± 0.057

6.142 ± 0.066

4.746 ± 0.053

6.828 ± 0.053

1.616 ± 0.02

10.107 ± 0.06

7.476 ± 0.065

8.665 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.061 ± 0.028

6.057 ± 0.065

3.484 ± 0.034

1.907 ± 0.024

3.905 ± 0.041

7.294 ± 0.054

5.04 ± 0.052

6.006 ± 0.043

0.753 ± 0.017

4.967 ± 0.047
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski