Faeces associated gemycircularvirus 10

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemygorvirus; Gemygorvirus stara1; Starling associated gemygorvirus 1

Average proteome isoelectric point is 7.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|T1YRV6|T1YRV6_9VIRU Capsid protein OS=Faeces associated gemycircularvirus 10 OX=1391025 PE=4 SV=1
MM1 pKa = 7.5SNSTLLSVTLCPHH14 pKa = 6.03YY15 pKa = 10.8LCPCDD20 pKa = 5.08GLDD23 pKa = 3.19YY24 pKa = 10.83WRR26 pKa = 11.84VLDD29 pKa = 4.57HH30 pKa = 6.78LSEE33 pKa = 4.43VPAEE37 pKa = 4.16CIIGRR42 pKa = 11.84EE43 pKa = 3.97AHH45 pKa = 6.81ADD47 pKa = 3.53GGTHH51 pKa = 6.7LHH53 pKa = 6.66AFCDD57 pKa = 4.23FGEE60 pKa = 4.35RR61 pKa = 11.84FYY63 pKa = 10.87TADD66 pKa = 3.36PRR68 pKa = 11.84RR69 pKa = 11.84FDD71 pKa = 3.24VDD73 pKa = 4.03GYY75 pKa = 10.65HH76 pKa = 7.43PNVQPFGRR84 pKa = 11.84TPYY87 pKa = 10.29KK88 pKa = 10.43GWDD91 pKa = 3.43YY92 pKa = 11.11AIKK95 pKa = 10.84DD96 pKa = 3.55GDD98 pKa = 4.3VVCGGLEE105 pKa = 3.97RR106 pKa = 11.84PGTGPGTDD114 pKa = 3.02VSGAGSQWDD123 pKa = 4.01RR124 pKa = 11.84IVGAEE129 pKa = 4.23TPDD132 pKa = 3.51EE133 pKa = 4.15FWRR136 pKa = 11.84LIRR139 pKa = 11.84EE140 pKa = 4.38LAPRR144 pKa = 11.84TLLTNFNSVRR154 pKa = 11.84AYY156 pKa = 10.65ADD158 pKa = 2.69WHH160 pKa = 5.55YY161 pKa = 10.75RR162 pKa = 11.84PVVAPYY168 pKa = 9.03EE169 pKa = 4.33SPPEE173 pKa = 3.9IEE175 pKa = 4.44FDD177 pKa = 3.48LSGVEE182 pKa = 4.74EE183 pKa = 4.05LRR185 pKa = 11.84EE186 pKa = 4.09WVCNNLSRR194 pKa = 11.84TRR196 pKa = 11.84RR197 pKa = 11.84PKK199 pKa = 10.61SLVLYY204 pKa = 10.61GEE206 pKa = 4.24SRR208 pKa = 11.84LGKK211 pKa = 7.36TLWARR216 pKa = 11.84SLGRR220 pKa = 11.84HH221 pKa = 5.63VYY223 pKa = 10.33NCLQFNVDD231 pKa = 3.92DD232 pKa = 3.77MRR234 pKa = 11.84GDD236 pKa = 3.52VEE238 pKa = 4.03EE239 pKa = 4.36ALYY242 pKa = 10.91AVFDD246 pKa = 4.22DD247 pKa = 3.87MQGGFKK253 pKa = 10.6YY254 pKa = 10.49FPSYY258 pKa = 10.47KK259 pKa = 9.96GWLGAQSKK267 pKa = 7.6FTVTDD272 pKa = 3.76KK273 pKa = 11.37YY274 pKa = 10.65RR275 pKa = 11.84GKK277 pKa = 9.31TSVIWGRR284 pKa = 11.84PTIWLCNEE292 pKa = 3.98SPRR295 pKa = 11.84DD296 pKa = 3.75FTDD299 pKa = 4.49VDD301 pKa = 4.2MTWLEE306 pKa = 4.1ANCVFVEE313 pKa = 4.07VTNPIFRR320 pKa = 11.84ANIEE324 pKa = 3.95

Molecular weight: 36.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|T1YRV6|T1YRV6_9VIRU Capsid protein OS=Faeces associated gemycircularvirus 10 OX=1391025 PE=4 SV=1
MM1 pKa = 7.54PGYY4 pKa = 9.94RR5 pKa = 11.84SKK7 pKa = 11.0RR8 pKa = 11.84KK9 pKa = 9.26YY10 pKa = 10.18RR11 pKa = 11.84RR12 pKa = 11.84TSRR15 pKa = 11.84KK16 pKa = 8.74GGRR19 pKa = 11.84SLRR22 pKa = 11.84RR23 pKa = 11.84RR24 pKa = 11.84SGYY27 pKa = 9.84RR28 pKa = 11.84KK29 pKa = 8.82SSKK32 pKa = 9.72GRR34 pKa = 11.84RR35 pKa = 11.84FLRR38 pKa = 11.84GRR40 pKa = 11.84RR41 pKa = 11.84GMSRR45 pKa = 11.84KK46 pKa = 9.7ALLNVTSRR54 pKa = 11.84KK55 pKa = 9.78KK56 pKa = 10.19RR57 pKa = 11.84DD58 pKa = 3.21TMLSYY63 pKa = 11.18TNVSTSSQIGSANYY77 pKa = 9.47VVGPAVLAGGAQRR90 pKa = 11.84FFLWCATARR99 pKa = 11.84GISTYY104 pKa = 11.36NNFDD108 pKa = 3.41ASLIDD113 pKa = 3.6QSSRR117 pKa = 11.84TATNCYY123 pKa = 9.02MRR125 pKa = 11.84GLKK128 pKa = 9.77EE129 pKa = 4.37RR130 pKa = 11.84IRR132 pKa = 11.84ISTDD136 pKa = 3.54DD137 pKa = 3.51GMPWLWRR144 pKa = 11.84RR145 pKa = 11.84ICFTSRR151 pKa = 11.84NLNLRR156 pKa = 11.84GYY158 pKa = 7.87QTGAGTSYY166 pKa = 11.29SPAFLTSAGFMRR178 pKa = 11.84GVNQPYY184 pKa = 9.6NDD186 pKa = 3.74SYY188 pKa = 11.8INDD191 pKa = 4.57LLWKK195 pKa = 8.89GTLGKK200 pKa = 10.11DD201 pKa = 2.85WNDD204 pKa = 3.0FMTATVDD211 pKa = 3.29NRR213 pKa = 11.84RR214 pKa = 11.84VDD216 pKa = 3.51VKK218 pKa = 10.96YY219 pKa = 11.27DD220 pKa = 3.2KK221 pKa = 8.68TTTIAAGNEE230 pKa = 4.02EE231 pKa = 4.21GCIRR235 pKa = 11.84EE236 pKa = 4.09FNRR239 pKa = 11.84WHH241 pKa = 6.97PMNKK245 pKa = 9.63SLVYY249 pKa = 10.49DD250 pKa = 3.94DD251 pKa = 5.57EE252 pKa = 4.5EE253 pKa = 6.46AGDD256 pKa = 3.79EE257 pKa = 4.15AAGSVFSVTDD267 pKa = 3.22KK268 pKa = 11.26RR269 pKa = 11.84GMGDD273 pKa = 3.94YY274 pKa = 11.04YY275 pKa = 11.65VMDD278 pKa = 3.57IFDD281 pKa = 4.56PRR283 pKa = 11.84SGSTSASHH291 pKa = 7.44LSFRR295 pKa = 11.84PDD297 pKa = 2.7ATLYY301 pKa = 7.81WHH303 pKa = 6.64EE304 pKa = 4.21RR305 pKa = 3.47

Molecular weight: 34.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

629

305

324

314.5

35.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.041 ± 0.358

2.226 ± 0.635

7.154 ± 0.414

4.61 ± 1.38

4.452 ± 0.359

8.903 ± 0.193

1.749 ± 0.531

3.18 ± 0.069

3.816 ± 0.765

7.154 ± 0.642

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.226 ± 0.731

4.452 ± 0.551

4.452 ± 1.269

1.59 ± 0.034

9.857 ± 1.579

7.631 ± 1.758

6.677 ± 0.6

6.041 ± 1.235

2.862 ± 0.393

4.928 ± 0.22
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski