Lynx canadensis faeces associated genomovirus CL1 58

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; unclassified Genomoviridae

Average proteome isoelectric point is 7.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5CI18|A0A2Z5CI18_9VIRU Replication-associated protein OS=Lynx canadensis faeces associated genomovirus CL1 58 OX=2219126 PE=3 SV=1
MM1 pKa = 7.75PSFVANFKK9 pKa = 10.24YY10 pKa = 10.83ALVTYY15 pKa = 6.91SQCGDD20 pKa = 3.79LDD22 pKa = 3.55PWSVMEE28 pKa = 4.86LFSSLGAEE36 pKa = 4.24CIIGRR41 pKa = 11.84EE42 pKa = 4.01HH43 pKa = 7.75HH44 pKa = 6.83EE45 pKa = 4.72DD46 pKa = 3.59GGTHH50 pKa = 5.89LHH52 pKa = 5.88VFVDD56 pKa = 4.55FGRR59 pKa = 11.84KK60 pKa = 7.93FRR62 pKa = 11.84SRR64 pKa = 11.84ATNVFDD70 pKa = 5.08VDD72 pKa = 3.5GHH74 pKa = 6.44HH75 pKa = 7.29PNIEE79 pKa = 4.06PSKK82 pKa = 8.78GTPEE86 pKa = 4.01KK87 pKa = 11.01GFDD90 pKa = 3.46YY91 pKa = 10.65AIKK94 pKa = 10.85DD95 pKa = 3.45GDD97 pKa = 4.33VVCGGLGRR105 pKa = 11.84PEE107 pKa = 4.06PSRR110 pKa = 11.84GGNSGVLAKK119 pKa = 7.87WTRR122 pKa = 11.84ITGATDD128 pKa = 3.13KK129 pKa = 11.52QEE131 pKa = 4.11FWDD134 pKa = 4.65LVHH137 pKa = 6.98EE138 pKa = 5.1LDD140 pKa = 4.6PKK142 pKa = 10.76SAACSFTSLSKK153 pKa = 10.06YY154 pKa = 10.56ADD156 pKa = 2.96WKK158 pKa = 10.68FAVDD162 pKa = 4.22PPCYY166 pKa = 8.96EE167 pKa = 4.02HH168 pKa = 7.56PGGFDD173 pKa = 3.41FSDD176 pKa = 3.9GSFDD180 pKa = 4.32GRR182 pKa = 11.84SEE184 pKa = 4.2CKK186 pKa = 10.23SLVMYY191 pKa = 10.37GPSRR195 pKa = 11.84TGKK198 pKa = 8.21TMWARR203 pKa = 11.84SLGAHH208 pKa = 7.19LYY210 pKa = 10.52CVGLLSGDD218 pKa = 3.43EE219 pKa = 4.17CMKK222 pKa = 10.97AEE224 pKa = 4.07YY225 pKa = 10.43ADD227 pKa = 3.75YY228 pKa = 11.08AIFDD232 pKa = 4.25DD233 pKa = 4.69LRR235 pKa = 11.84GGVKK239 pKa = 9.8FFPAFKK245 pKa = 9.49EE246 pKa = 3.89WLGAQQYY253 pKa = 7.12VTVKK257 pKa = 10.5RR258 pKa = 11.84LYY260 pKa = 10.56HH261 pKa = 5.72EE262 pKa = 4.69PKK264 pKa = 9.56LVKK267 pKa = 9.05WGKK270 pKa = 9.69PSIFLTNSDD279 pKa = 4.19PRR281 pKa = 11.84DD282 pKa = 3.48EE283 pKa = 4.34ATGDD287 pKa = 3.5DD288 pKa = 4.13RR289 pKa = 11.84DD290 pKa = 3.78WLEE293 pKa = 4.08RR294 pKa = 11.84NCDD297 pKa = 4.42FIYY300 pKa = 9.55VQEE303 pKa = 5.02PIFHH307 pKa = 7.21ANTEE311 pKa = 4.14

Molecular weight: 34.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5CI18|A0A2Z5CI18_9VIRU Replication-associated protein OS=Lynx canadensis faeces associated genomovirus CL1 58 OX=2219126 PE=3 SV=1
MM1 pKa = 7.8PARR4 pKa = 11.84AYY6 pKa = 9.86RR7 pKa = 11.84RR8 pKa = 11.84KK9 pKa = 9.34SGSYY13 pKa = 9.45RR14 pKa = 11.84GRR16 pKa = 11.84KK17 pKa = 9.06RR18 pKa = 11.84GGPTKK23 pKa = 10.37RR24 pKa = 11.84AWSNYY29 pKa = 8.11KK30 pKa = 10.19RR31 pKa = 11.84STGRR35 pKa = 11.84TRR37 pKa = 11.84PYY39 pKa = 8.19RR40 pKa = 11.84TSRR43 pKa = 11.84TRR45 pKa = 11.84QKK47 pKa = 10.64PMSRR51 pKa = 11.84KK52 pKa = 9.74KK53 pKa = 10.01ILNVTSEE60 pKa = 4.03KK61 pKa = 10.67KK62 pKa = 9.49RR63 pKa = 11.84DD64 pKa = 4.56KK65 pKa = 10.14MLCWTNTIAGTPQGGTTYY83 pKa = 8.82TQSPAILTGAGADD96 pKa = 3.47PYY98 pKa = 11.28LFAWCATARR107 pKa = 11.84DD108 pKa = 4.19NTTSTGGAAHH118 pKa = 7.57AGTKK122 pKa = 9.38FDD124 pKa = 3.59KK125 pKa = 10.21ATRR128 pKa = 11.84TASEE132 pKa = 4.82CYY134 pKa = 8.93MVGLSEE140 pKa = 5.4RR141 pKa = 11.84IEE143 pKa = 4.04IQCADD148 pKa = 3.69GLPWQWRR155 pKa = 11.84RR156 pKa = 11.84ICFTMKK162 pKa = 10.51GGVGLDD168 pKa = 3.5GTLTTGSTFSSYY180 pKa = 11.46SEE182 pKa = 4.15TTSGYY187 pKa = 9.17VRR189 pKa = 11.84TVNSVLLTDD198 pKa = 3.86RR199 pKa = 11.84TSLYY203 pKa = 11.13SLLFAGAQSSDD214 pKa = 2.6WSDD217 pKa = 3.44PMVAPLDD224 pKa = 3.53RR225 pKa = 11.84RR226 pKa = 11.84RR227 pKa = 11.84INVKK231 pKa = 9.65YY232 pKa = 10.89DD233 pKa = 2.98KK234 pKa = 8.37TTSIASGNEE243 pKa = 3.47DD244 pKa = 3.28GVIRR248 pKa = 11.84KK249 pKa = 5.55YY250 pKa = 9.38TKK252 pKa = 7.92WHH254 pKa = 6.36PMGKK258 pKa = 7.54TLMYY262 pKa = 10.87DD263 pKa = 3.38DD264 pKa = 5.72DD265 pKa = 5.0EE266 pKa = 4.65NTGAEE271 pKa = 4.18NPAVISVDD279 pKa = 3.2NKK281 pKa = 10.65QGMGDD286 pKa = 3.57FWVLDD291 pKa = 4.45FIKK294 pKa = 10.35PRR296 pKa = 11.84MGSTSSNQLSFRR308 pKa = 11.84PEE310 pKa = 3.66STLYY314 pKa = 8.15WHH316 pKa = 6.78EE317 pKa = 4.04RR318 pKa = 3.41

Molecular weight: 35.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

629

311

318

314.5

35.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.677 ± 0.172

2.226 ± 0.466

7.154 ± 1.066

4.61 ± 1.046

4.61 ± 1.495

9.539 ± 0.299

2.226 ± 0.915

3.18 ± 0.199

6.2 ± 0.064

6.2 ± 0.385

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.385 ± 0.542

2.862 ± 0.426

4.928 ± 0.375

2.067 ± 0.32

6.995 ± 1.516

8.267 ± 0.833

8.108 ± 2.517

4.928 ± 0.824

2.703 ± 0.091

4.134 ± 0.192
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski