Parthenium leaf curl alphasatellite

Taxonomy: Viruses; Alphasatellitidae; Geminialphasatellitinae; unclassified Begomovirus-associated alphasatellites

Average proteome isoelectric point is 7.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A143WDM6|A0A143WDM6_9VIRU Replication associated protein OS=Parthenium leaf curl alphasatellite OX=1755198 GN=alpha Rep PE=4 SV=1
MM1 pKa = 7.74KK2 pKa = 10.4EE3 pKa = 3.83EE4 pKa = 4.23TRR6 pKa = 11.84VSGPFEE12 pKa = 4.33FGDD15 pKa = 3.87YY16 pKa = 10.5CPSGSHH22 pKa = 6.46KK23 pKa = 10.13RR24 pKa = 11.84RR25 pKa = 11.84QRR27 pKa = 11.84EE28 pKa = 3.79LVIRR32 pKa = 11.84SPVRR36 pKa = 11.84MAEE39 pKa = 4.07EE40 pKa = 4.09NPSVFRR46 pKa = 11.84RR47 pKa = 11.84VKK49 pKa = 10.51AKK51 pKa = 10.22LAEE54 pKa = 4.11EE55 pKa = 4.52EE56 pKa = 4.33FQKK59 pKa = 10.72SAPEE63 pKa = 3.59IQIRR67 pKa = 11.84NLKK70 pKa = 9.41SWQLRR75 pKa = 11.84LKK77 pKa = 9.21TLLGRR82 pKa = 11.84DD83 pKa = 3.56PDD85 pKa = 3.66DD86 pKa = 3.61RR87 pKa = 11.84TIFWVYY93 pKa = 10.74GPTGGEE99 pKa = 4.17GKK101 pKa = 8.47STFARR106 pKa = 11.84DD107 pKa = 3.97LYY109 pKa = 11.14RR110 pKa = 11.84SGGWFYY116 pKa = 11.09TRR118 pKa = 11.84GGSADD123 pKa = 3.36NVAYY127 pKa = 10.18QYY129 pKa = 10.65IGCLGNNIVFDD140 pKa = 3.87IPRR143 pKa = 11.84DD144 pKa = 3.6KK145 pKa = 10.91KK146 pKa = 11.07DD147 pKa = 3.31YY148 pKa = 10.37LQYY151 pKa = 11.61SLIEE155 pKa = 4.03MFKK158 pKa = 11.15DD159 pKa = 3.29RR160 pKa = 11.84LIVSNKK166 pKa = 9.63YY167 pKa = 9.28EE168 pKa = 4.23PLMAPLVNCIHH179 pKa = 5.92VVVMSNFLPDD189 pKa = 3.69FEE191 pKa = 6.43KK192 pKa = 10.53ISSDD196 pKa = 3.08RR197 pKa = 11.84VHH199 pKa = 7.2VIPCIPCGVCRR210 pKa = 11.84RR211 pKa = 11.84HH212 pKa = 6.55HH213 pKa = 5.17ITEE216 pKa = 4.48IKK218 pKa = 10.37CEE220 pKa = 4.08EE221 pKa = 4.3YY222 pKa = 11.22VDD224 pKa = 3.7

Molecular weight: 25.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A143WDM6|A0A143WDM6_9VIRU Replication associated protein OS=Parthenium leaf curl alphasatellite OX=1755198 GN=alpha Rep PE=4 SV=1
MM1 pKa = 7.74KK2 pKa = 10.4EE3 pKa = 3.83EE4 pKa = 4.23TRR6 pKa = 11.84VSGPFEE12 pKa = 4.33FGDD15 pKa = 3.87YY16 pKa = 10.5CPSGSHH22 pKa = 6.46KK23 pKa = 10.13RR24 pKa = 11.84RR25 pKa = 11.84QRR27 pKa = 11.84EE28 pKa = 3.79LVIRR32 pKa = 11.84SPVRR36 pKa = 11.84MAEE39 pKa = 4.07EE40 pKa = 4.09NPSVFRR46 pKa = 11.84RR47 pKa = 11.84VKK49 pKa = 10.51AKK51 pKa = 10.22LAEE54 pKa = 4.11EE55 pKa = 4.52EE56 pKa = 4.33FQKK59 pKa = 10.72SAPEE63 pKa = 3.59IQIRR67 pKa = 11.84NLKK70 pKa = 9.41SWQLRR75 pKa = 11.84LKK77 pKa = 9.21TLLGRR82 pKa = 11.84DD83 pKa = 3.56PDD85 pKa = 3.66DD86 pKa = 3.61RR87 pKa = 11.84TIFWVYY93 pKa = 10.74GPTGGEE99 pKa = 4.17GKK101 pKa = 8.47STFARR106 pKa = 11.84DD107 pKa = 3.97LYY109 pKa = 11.14RR110 pKa = 11.84SGGWFYY116 pKa = 11.09TRR118 pKa = 11.84GGSADD123 pKa = 3.36NVAYY127 pKa = 10.18QYY129 pKa = 10.65IGCLGNNIVFDD140 pKa = 3.87IPRR143 pKa = 11.84DD144 pKa = 3.6KK145 pKa = 10.91KK146 pKa = 11.07DD147 pKa = 3.31YY148 pKa = 10.37LQYY151 pKa = 11.61SLIEE155 pKa = 4.03MFKK158 pKa = 11.15DD159 pKa = 3.29RR160 pKa = 11.84LIVSNKK166 pKa = 9.63YY167 pKa = 9.28EE168 pKa = 4.23PLMAPLVNCIHH179 pKa = 5.92VVVMSNFLPDD189 pKa = 3.69FEE191 pKa = 6.43KK192 pKa = 10.53ISSDD196 pKa = 3.08RR197 pKa = 11.84VHH199 pKa = 7.2VIPCIPCGVCRR210 pKa = 11.84RR211 pKa = 11.84HH212 pKa = 6.55HH213 pKa = 5.17ITEE216 pKa = 4.48IKK218 pKa = 10.37CEE220 pKa = 4.08EE221 pKa = 4.3YY222 pKa = 11.22VDD224 pKa = 3.7

Molecular weight: 25.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

224

224

224

224.0

25.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.571 ± 0.0

3.125 ± 0.0

5.804 ± 0.0

7.589 ± 0.0

4.911 ± 0.0

6.696 ± 0.0

2.232 ± 0.0

6.696 ± 0.0

6.25 ± 0.0

6.696 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.232 ± 0.0

3.571 ± 0.0

5.804 ± 0.0

2.679 ± 0.0

8.929 ± 0.0

6.696 ± 0.0

3.125 ± 0.0

7.589 ± 0.0

1.339 ± 0.0

4.464 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski