Aerococcus phage vB_AviM_AVP

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; unclassified Herelleviridae

Average proteome isoelectric point is 5.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 165 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S7SGJ1|A0A3S7SGJ1_9CAUD Uncharacterized protein OS=Aerococcus phage vB_AviM_AVP OX=2495576 GN=AVP_148 PE=4 SV=1
MM1 pKa = 7.73ANLIEE6 pKa = 5.2LIYY9 pKa = 10.48EE10 pKa = 3.95NTMNNGDD17 pKa = 4.49DD18 pKa = 6.24LMTFWNVMSEE28 pKa = 4.22LEE30 pKa = 4.14EE31 pKa = 4.13TTISVDD37 pKa = 3.52YY38 pKa = 11.34GDD40 pKa = 4.52DD41 pKa = 3.68TQVPLLKK48 pKa = 10.25ADD50 pKa = 3.63NEE52 pKa = 4.44AIEE55 pKa = 4.01LHH57 pKa = 6.19EE58 pKa = 4.68FFDD61 pKa = 4.34RR62 pKa = 11.84EE63 pKa = 4.02APYY66 pKa = 11.36GEE68 pKa = 4.37VQHH71 pKa = 6.97LDD73 pKa = 3.48QEE75 pKa = 4.52EE76 pKa = 4.34LEE78 pKa = 4.38EE79 pKa = 4.55LSEE82 pKa = 5.28QGFEE86 pKa = 4.18WEE88 pKa = 5.1HH89 pKa = 6.07LASDD93 pKa = 3.45NTFNYY98 pKa = 10.42SSFIEE103 pKa = 3.87RR104 pKa = 11.84DD105 pKa = 3.24FNFNVFEE112 pKa = 4.51SNIGDD117 pKa = 3.54ILVTFNISTGLDD129 pKa = 3.1PRR131 pKa = 11.84GRR133 pKa = 11.84YY134 pKa = 7.54STGFAILFDD143 pKa = 4.36SYY145 pKa = 11.59DD146 pKa = 3.45AYY148 pKa = 10.32IEE150 pKa = 4.05FMNEE154 pKa = 2.83QFTFFNIEE162 pKa = 3.42LRR164 pKa = 11.84YY165 pKa = 8.38TDD167 pKa = 3.53EE168 pKa = 4.59EE169 pKa = 4.58GDD171 pKa = 3.35EE172 pKa = 3.87RR173 pKa = 11.84RR174 pKa = 11.84EE175 pKa = 3.84YY176 pKa = 11.26FEE178 pKa = 5.18VNGSLFSHH186 pKa = 7.2EE187 pKa = 4.13IEE189 pKa = 5.06LYY191 pKa = 10.93CKK193 pKa = 10.76DD194 pKa = 4.08EE195 pKa = 5.52DD196 pKa = 3.48IQEE199 pKa = 4.32YY200 pKa = 10.46IEE202 pKa = 4.37TYY204 pKa = 10.4EE205 pKa = 4.71LDD207 pKa = 3.44VDD209 pKa = 4.78SLLEE213 pKa = 4.04QIKK216 pKa = 9.82EE217 pKa = 3.99LPLYY221 pKa = 10.59EE222 pKa = 5.73DD223 pKa = 4.53IEE225 pKa = 4.86DD226 pKa = 3.99LEE228 pKa = 4.48LWW230 pKa = 3.77

Molecular weight: 27.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S7SGS6|A0A3S7SGS6_9CAUD Uncharacterized protein OS=Aerococcus phage vB_AviM_AVP OX=2495576 GN=AVP_155 PE=4 SV=1
MM1 pKa = 7.57GIVLGAFMGWIVGTLIVRR19 pKa = 11.84TFIEE23 pKa = 4.24IPEE26 pKa = 4.29GRR28 pKa = 11.84SGSRR32 pKa = 11.84YY33 pKa = 8.12RR34 pKa = 11.84LVWRR38 pKa = 11.84KK39 pKa = 9.57SKK41 pKa = 10.91NYY43 pKa = 10.71NKK45 pKa = 10.17FF46 pKa = 3.06

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

165

0

165

38393

46

1554

232.7

26.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.894 ± 0.258

0.31 ± 0.047

7.014 ± 0.176

8.934 ± 0.381

3.73 ± 0.151

6.413 ± 0.394

1.399 ± 0.091

6.806 ± 0.154

7.78 ± 0.283

8.291 ± 0.231

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.253 ± 0.111

6.699 ± 0.144

2.993 ± 0.157

3.188 ± 0.148

3.615 ± 0.146

6.657 ± 0.266

6.577 ± 0.256

6.272 ± 0.182

0.906 ± 0.069

5.269 ± 0.178
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski