Trichuris trichiura (Whipworm) (Trichocephalus trichiurus)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichuridae; Trichuris

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9625 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A077ZH41|A0A077ZH41_TRITR CSD domain containing protein OS=Trichuris trichiura OX=36087 GN=TTRE_0000731701 PE=4 SV=1
MM1 pKa = 8.07ADD3 pKa = 3.57TDD5 pKa = 4.22LSTNQLLDD13 pKa = 3.46VPLEE17 pKa = 4.02DD18 pKa = 3.55QYY20 pKa = 11.99GGEE23 pKa = 4.03VAMEE27 pKa = 4.18NGCEE31 pKa = 3.73ITALSMLLNYY41 pKa = 10.0YY42 pKa = 10.71GYY44 pKa = 8.86GTDD47 pKa = 3.56KK48 pKa = 11.61NEE50 pKa = 4.85LVDD53 pKa = 5.39LLDD56 pKa = 4.22FVPLYY61 pKa = 10.79EE62 pKa = 4.55DD63 pKa = 3.42AEE65 pKa = 4.34KK66 pKa = 10.49RR67 pKa = 11.84IHH69 pKa = 6.75GNPHH73 pKa = 6.72DD74 pKa = 4.2GFVGNIYY81 pKa = 10.38EE82 pKa = 4.67GYY84 pKa = 9.18EE85 pKa = 3.9AMGVAVEE92 pKa = 5.21PIAEE96 pKa = 4.24VANEE100 pKa = 3.98VVQDD104 pKa = 3.87NQKK107 pKa = 10.01VVANNDD113 pKa = 2.95TSFDD117 pKa = 3.7DD118 pKa = 4.01LVRR121 pKa = 11.84VIQTGTPVWVITTVDD136 pKa = 4.02FQVPTEE142 pKa = 4.12DD143 pKa = 6.16DD144 pKa = 3.37FRR146 pKa = 11.84TWQTTSGEE154 pKa = 4.24IEE156 pKa = 4.31VSPLCHH162 pKa = 6.15AVIITGVDD170 pKa = 3.37EE171 pKa = 4.48EE172 pKa = 4.4NVYY175 pKa = 11.18VNDD178 pKa = 3.87PYY180 pKa = 11.19GYY182 pKa = 10.2KK183 pKa = 10.36NRR185 pKa = 11.84VVDD188 pKa = 3.54RR189 pKa = 11.84TDD191 pKa = 3.38FEE193 pKa = 4.95EE194 pKa = 5.3IYY196 pKa = 10.88QLMGSEE202 pKa = 4.26SLYY205 pKa = 11.31LEE207 pKa = 5.13DD208 pKa = 5.14KK209 pKa = 11.1

Molecular weight: 23.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A077ZKX5|A0A077ZKX5_TRITR CbiA and ParBc and KorB domain containing protein OS=Trichuris trichiura OX=36087 GN=TTRE_0000757601 PE=4 SV=1
MM1 pKa = 6.94QWRR4 pKa = 11.84SVAWRR9 pKa = 11.84GVAWRR14 pKa = 11.84GVAWRR19 pKa = 11.84GGAGSGVAWRR29 pKa = 11.84GVAWGVRR36 pKa = 11.84CGGVGRR42 pKa = 11.84GVAWRR47 pKa = 11.84GGVGRR52 pKa = 11.84GVAWRR57 pKa = 11.84GGVGRR62 pKa = 11.84GVAWRR67 pKa = 11.84GVAWRR72 pKa = 11.84GG73 pKa = 3.16

Molecular weight: 7.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9625

0

9625

4182167

31

7532

434.5

48.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.122 ± 0.026

2.487 ± 0.024

5.258 ± 0.02

6.406 ± 0.03

4.376 ± 0.017

5.766 ± 0.03

2.312 ± 0.012

5.197 ± 0.019

5.675 ± 0.025

9.761 ± 0.031

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.448 ± 0.01

4.252 ± 0.014

4.699 ± 0.023

3.97 ± 0.018

5.887 ± 0.018

7.934 ± 0.029

5.23 ± 0.017

6.821 ± 0.018

1.233 ± 0.009

3.162 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski