Peanut clump virus (isolate 87/TGTA2) (PCV)

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Pecluvirus; Peanut clump virus

Average proteome isoelectric point is 7.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q08552|TGB3_PCV87 Movement protein TGB3 OS=Peanut clump virus (isolate 87/TGTA2) OX=652837 PE=3 SV=1
MM1 pKa = 6.91EE2 pKa = 4.07WRR4 pKa = 11.84RR5 pKa = 11.84AFSKK9 pKa = 10.69KK10 pKa = 10.1KK11 pKa = 10.65LEE13 pKa = 4.16EE14 pKa = 3.89KK15 pKa = 9.96VKK17 pKa = 11.15NMDD20 pKa = 3.12AKK22 pKa = 10.77QATDD26 pKa = 3.53YY27 pKa = 11.43LLEE30 pKa = 4.52KK31 pKa = 10.52VDD33 pKa = 3.66EE34 pKa = 4.15QRR36 pKa = 11.84NLEE39 pKa = 4.11NKK41 pKa = 9.77LDD43 pKa = 3.71KK44 pKa = 10.74RR45 pKa = 11.84LQNTRR50 pKa = 11.84KK51 pKa = 9.85KK52 pKa = 10.61NKK54 pKa = 9.47NKK56 pKa = 10.31EE57 pKa = 4.05KK58 pKa = 9.65TRR60 pKa = 11.84TWAEE64 pKa = 3.74KK65 pKa = 10.23YY66 pKa = 10.37PPVDD70 pKa = 3.33YY71 pKa = 10.94YY72 pKa = 11.63SPEE75 pKa = 3.77FVEE78 pKa = 5.85NFMKK82 pKa = 10.7DD83 pKa = 3.03MRR85 pKa = 11.84RR86 pKa = 11.84EE87 pKa = 3.8EE88 pKa = 4.2FEE90 pKa = 3.83KK91 pKa = 10.48SEE93 pKa = 3.93EE94 pKa = 4.15RR95 pKa = 11.84RR96 pKa = 11.84GHH98 pKa = 4.84KK99 pKa = 8.02QVRR102 pKa = 11.84LGSDD106 pKa = 3.15NFVGDD111 pKa = 4.55DD112 pKa = 3.66PLKK115 pKa = 10.68VLSEE119 pKa = 4.23EE120 pKa = 3.92ALKK123 pKa = 11.01AGFQHH128 pKa = 6.33TGKK131 pKa = 10.46VMKK134 pKa = 10.24RR135 pKa = 11.84FPADD139 pKa = 3.06VFEE142 pKa = 4.31KK143 pKa = 10.86SKK145 pKa = 10.99FIGMYY150 pKa = 9.95DD151 pKa = 3.1RR152 pKa = 11.84HH153 pKa = 5.91LTTLRR158 pKa = 11.84EE159 pKa = 3.95KK160 pKa = 10.7ACCKK164 pKa = 10.22KK165 pKa = 10.24EE166 pKa = 3.84RR167 pKa = 11.84NQIQSKK173 pKa = 10.16LIQLRR178 pKa = 11.84QLKK181 pKa = 9.55PSCDD185 pKa = 3.61FLAGTVSGVPGSGKK199 pKa = 8.62STLLKK204 pKa = 10.58NVQKK208 pKa = 10.71KK209 pKa = 10.06LKK211 pKa = 10.82NSVCLLANKK220 pKa = 8.26EE221 pKa = 4.19LKK223 pKa = 10.68GDD225 pKa = 3.81FAGVPSVFSVEE236 pKa = 4.04EE237 pKa = 4.03MLLSAVPSSFNVMLVDD253 pKa = 5.45EE254 pKa = 4.56YY255 pKa = 11.33TLTQSAEE262 pKa = 3.72ILLLQRR268 pKa = 11.84KK269 pKa = 8.82LGAKK273 pKa = 9.47IVVLFGDD280 pKa = 4.1RR281 pKa = 11.84EE282 pKa = 4.06QGNTNKK288 pKa = 8.89LTSPEE293 pKa = 4.0WLHH296 pKa = 6.05VPIVFSSDD304 pKa = 2.66SSHH307 pKa = 7.14RR308 pKa = 11.84FGPEE312 pKa = 3.2TAKK315 pKa = 10.67FCEE318 pKa = 4.21DD319 pKa = 2.9QGFSLEE325 pKa = 4.13GRR327 pKa = 11.84GGEE330 pKa = 4.08DD331 pKa = 3.63KK332 pKa = 10.58IVKK335 pKa = 9.85GDD337 pKa = 3.68YY338 pKa = 10.18EE339 pKa = 4.88GEE341 pKa = 4.42GEE343 pKa = 4.09DD344 pKa = 4.72TEE346 pKa = 5.19VNLCFTEE353 pKa = 4.21EE354 pKa = 4.01TKK356 pKa = 11.12ADD358 pKa = 3.73LAEE361 pKa = 4.27VQVEE365 pKa = 4.18AFLVSSVQGRR375 pKa = 11.84TFSSVSLFVRR385 pKa = 11.84EE386 pKa = 3.41NDD388 pKa = 3.37KK389 pKa = 11.1PVFSDD394 pKa = 2.82PHH396 pKa = 6.94LRR398 pKa = 11.84LVAITRR404 pKa = 11.84HH405 pKa = 5.75RR406 pKa = 11.84KK407 pKa = 9.08LLSIRR412 pKa = 11.84ADD414 pKa = 3.39PEE416 pKa = 4.05VWVSFMFATRR426 pKa = 11.84EE427 pKa = 4.1GEE429 pKa = 4.26EE430 pKa = 4.35VDD432 pKa = 3.35THH434 pKa = 7.01CYY436 pKa = 10.33GEE438 pKa = 3.99EE439 pKa = 3.93HH440 pKa = 6.94RR441 pKa = 11.84PDD443 pKa = 3.21EE444 pKa = 4.85AEE446 pKa = 3.76

Molecular weight: 51.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q08316|P39_PCV87 Protein P39 OS=Peanut clump virus (isolate 87/TGTA2) OX=652837 PE=4 SV=1
MM1 pKa = 7.21VKK3 pKa = 9.07STVPTRR9 pKa = 11.84PNKK12 pKa = 9.03YY13 pKa = 7.94WPGVVAIGLVSLFIFLSVSNQKK35 pKa = 10.42HH36 pKa = 4.66STTSGDD42 pKa = 3.85NIHH45 pKa = 6.69KK46 pKa = 9.94FSNGGTYY53 pKa = 9.73RR54 pKa = 11.84DD55 pKa = 3.52GSKK58 pKa = 10.71CITYY62 pKa = 10.28NRR64 pKa = 11.84NSPLAYY70 pKa = 10.26NGSSSNNTLFWLCLLGLSMVWIAYY94 pKa = 9.43CGYY97 pKa = 10.69KK98 pKa = 10.11SLSGQWHH105 pKa = 6.19SCQHH109 pKa = 6.59DD110 pKa = 3.64KK111 pKa = 11.6NEE113 pKa = 4.19RR114 pKa = 11.84NFLFEE119 pKa = 4.32CFEE122 pKa = 4.15

Molecular weight: 13.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

3091

122

1672

441.6

50.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.597 ± 0.36

2.297 ± 0.357

5.791 ± 0.319

7.409 ± 0.829

4.756 ± 0.215

5.532 ± 0.574

1.973 ± 0.236

4.109 ± 0.419

7.667 ± 0.646

9.803 ± 0.282

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.168 ± 0.249

4.012 ± 0.432

3.785 ± 0.237

3.429 ± 0.506

5.985 ± 0.591

7.894 ± 0.5

4.562 ± 0.37

8.153 ± 0.293

1.326 ± 0.21

3.72 ± 0.567
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski