Amino acid dipepetide frequency for Phaseolus vulgaris endornavirus 3

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.042AlaAla: 3.042 ± 0.0
0.811AlaCys: 0.811 ± 0.0
2.839AlaAsp: 2.839 ± 0.0
4.056AlaGlu: 4.056 ± 0.0
1.825AlaPhe: 1.825 ± 0.0
2.839AlaGly: 2.839 ± 0.0
0.608AlaHis: 0.608 ± 0.0
3.245AlaIle: 3.245 ± 0.0
3.65AlaLys: 3.65 ± 0.0
3.65AlaLeu: 3.65 ± 0.0
1.622AlaMet: 1.622 ± 0.0
5.881AlaAsn: 5.881 ± 0.0
1.622AlaPro: 1.622 ± 0.0
1.014AlaGln: 1.014 ± 0.0
4.056AlaArg: 4.056 ± 0.0
4.259AlaSer: 4.259 ± 0.0
2.636AlaThr: 2.636 ± 0.0
4.056AlaVal: 4.056 ± 0.0
0.811AlaTrp: 0.811 ± 0.0
2.434AlaTyr: 2.434 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.42CysAla: 1.42 ± 0.0
0.811CysCys: 0.811 ± 0.0
0.811CysAsp: 0.811 ± 0.0
1.217CysGlu: 1.217 ± 0.0
0.811CysPhe: 0.811 ± 0.0
1.622CysGly: 1.622 ± 0.0
0.203CysHis: 0.203 ± 0.0
0.406CysIle: 0.406 ± 0.0
0.608CysLys: 0.608 ± 0.0
3.245CysLeu: 3.245 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.811CysAsn: 0.811 ± 0.0
1.825CysPro: 1.825 ± 0.0
1.217CysGln: 1.217 ± 0.0
1.217CysArg: 1.217 ± 0.0
2.231CysSer: 2.231 ± 0.0
1.014CysThr: 1.014 ± 0.0
1.622CysVal: 1.622 ± 0.0
0.203CysTrp: 0.203 ± 0.0
0.406CysTyr: 0.406 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.434AspAla: 2.434 ± 0.0
1.217AspCys: 1.217 ± 0.0
3.042AspAsp: 3.042 ± 0.0
4.867AspGlu: 4.867 ± 0.0
2.434AspPhe: 2.434 ± 0.0
3.853AspGly: 3.853 ± 0.0
1.42AspHis: 1.42 ± 0.0
2.636AspIle: 2.636 ± 0.0
3.853AspLys: 3.853 ± 0.0
5.881AspLeu: 5.881 ± 0.0
0.811AspMet: 0.811 ± 0.0
3.245AspAsn: 3.245 ± 0.0
2.434AspPro: 2.434 ± 0.0
1.42AspGln: 1.42 ± 0.0
1.622AspArg: 1.622 ± 0.0
4.664AspSer: 4.664 ± 0.0
2.434AspThr: 2.434 ± 0.0
4.664AspVal: 4.664 ± 0.0
2.231AspTrp: 2.231 ± 0.0
2.028AspTyr: 2.028 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.853GluAla: 3.853 ± 0.0
1.42GluCys: 1.42 ± 0.0
4.259GluAsp: 4.259 ± 0.0
4.664GluGlu: 4.664 ± 0.0
2.636GluPhe: 2.636 ± 0.0
5.273GluGly: 5.273 ± 0.0
1.622GluHis: 1.622 ± 0.0
4.867GluIle: 4.867 ± 0.0
5.07GluLys: 5.07 ± 0.0
8.112GluLeu: 8.112 ± 0.0
2.434GluMet: 2.434 ± 0.0
3.853GluAsn: 3.853 ± 0.0
1.217GluPro: 1.217 ± 0.0
1.622GluGln: 1.622 ± 0.0
3.65GluArg: 3.65 ± 0.0
4.867GluSer: 4.867 ± 0.0
4.259GluThr: 4.259 ± 0.0
6.895GluVal: 6.895 ± 0.0
0.811GluTrp: 0.811 ± 0.0
2.028GluTyr: 2.028 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.622PheAla: 1.622 ± 0.0
1.217PheCys: 1.217 ± 0.0
1.825PheAsp: 1.825 ± 0.0
1.825PheGlu: 1.825 ± 0.0
1.42PhePhe: 1.42 ± 0.0
3.042PheGly: 3.042 ± 0.0
1.622PheHis: 1.622 ± 0.0
1.014PheIle: 1.014 ± 0.0
3.448PheLys: 3.448 ± 0.0
3.853PheLeu: 3.853 ± 0.0
1.217PheMet: 1.217 ± 0.0
3.65PheAsn: 3.65 ± 0.0
1.217PhePro: 1.217 ± 0.0
0.811PheGln: 0.811 ± 0.0
2.028PheArg: 2.028 ± 0.0
3.448PheSer: 3.448 ± 0.0
1.622PheThr: 1.622 ± 0.0
2.839PheVal: 2.839 ± 0.0
0.0PheTrp: 0.0 ± 0.0
0.608PheTyr: 0.608 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
1.622GlyAla: 1.622 ± 0.0
1.217GlyCys: 1.217 ± 0.0
4.664GlyAsp: 4.664 ± 0.0
3.65GlyGlu: 3.65 ± 0.0
3.448GlyPhe: 3.448 ± 0.0
3.448GlyGly: 3.448 ± 0.0
1.825GlyHis: 1.825 ± 0.0
5.678GlyIle: 5.678 ± 0.0
6.287GlyLys: 6.287 ± 0.0
7.301GlyLeu: 7.301 ± 0.0
0.811GlyMet: 0.811 ± 0.0
3.042GlyAsn: 3.042 ± 0.0
3.042GlyPro: 3.042 ± 0.0
1.622GlyGln: 1.622 ± 0.0
2.839GlyArg: 2.839 ± 0.0
3.65GlySer: 3.65 ± 0.0
2.434GlyThr: 2.434 ± 0.0
2.434GlyVal: 2.434 ± 0.0
0.203GlyTrp: 0.203 ± 0.0
2.028GlyTyr: 2.028 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.014HisAla: 1.014 ± 0.0
0.406HisCys: 0.406 ± 0.0
1.42HisAsp: 1.42 ± 0.0
1.217HisGlu: 1.217 ± 0.0
0.608HisPhe: 0.608 ± 0.0
1.42HisGly: 1.42 ± 0.0
1.217HisHis: 1.217 ± 0.0
0.811HisIle: 0.811 ± 0.0
2.231HisLys: 2.231 ± 0.0
2.028HisLeu: 2.028 ± 0.0
0.203HisMet: 0.203 ± 0.0
0.406HisAsn: 0.406 ± 0.0
0.0HisPro: 0.0 ± 0.0
0.811HisGln: 0.811 ± 0.0
1.42HisArg: 1.42 ± 0.0
2.434HisSer: 2.434 ± 0.0
0.608HisThr: 0.608 ± 0.0
1.217HisVal: 1.217 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.406HisTyr: 0.406 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.853IleAla: 3.853 ± 0.0
1.014IleCys: 1.014 ± 0.0
4.462IleAsp: 4.462 ± 0.0
4.056IleGlu: 4.056 ± 0.0
2.028IlePhe: 2.028 ± 0.0
4.462IleGly: 4.462 ± 0.0
1.42IleHis: 1.42 ± 0.0
4.259IleIle: 4.259 ± 0.0
6.49IleLys: 6.49 ± 0.0
6.49IleLeu: 6.49 ± 0.0
1.42IleMet: 1.42 ± 0.0
5.881IleAsn: 5.881 ± 0.0
3.65IlePro: 3.65 ± 0.0
2.028IleGln: 2.028 ± 0.0
2.839IleArg: 2.839 ± 0.0
5.476IleSer: 5.476 ± 0.0
4.056IleThr: 4.056 ± 0.0
3.042IleVal: 3.042 ± 0.0
0.406IleTrp: 0.406 ± 0.0
1.217IleTyr: 1.217 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.636LysAla: 2.636 ± 0.0
1.217LysCys: 1.217 ± 0.0
4.462LysAsp: 4.462 ± 0.0
5.476LysGlu: 5.476 ± 0.0
2.231LysPhe: 2.231 ± 0.0
3.65LysGly: 3.65 ± 0.0
2.028LysHis: 2.028 ± 0.0
5.881LysIle: 5.881 ± 0.0
3.448LysLys: 3.448 ± 0.0
8.315LysLeu: 8.315 ± 0.0
2.839LysMet: 2.839 ± 0.0
5.476LysAsn: 5.476 ± 0.0
2.231LysPro: 2.231 ± 0.0
2.028LysGln: 2.028 ± 0.0
4.056LysArg: 4.056 ± 0.0
3.448LysSer: 3.448 ± 0.0
3.448LysThr: 3.448 ± 0.0
5.881LysVal: 5.881 ± 0.0
0.608LysTrp: 0.608 ± 0.0
2.434LysTyr: 2.434 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.287LeuAla: 6.287 ± 0.0
2.231LeuCys: 2.231 ± 0.0
6.692LeuAsp: 6.692 ± 0.0
7.909LeuGlu: 7.909 ± 0.0
4.056LeuPhe: 4.056 ± 0.0
6.084LeuGly: 6.084 ± 0.0
1.622LeuHis: 1.622 ± 0.0
8.923LeuIle: 8.923 ± 0.0
4.867LeuLys: 4.867 ± 0.0
7.098LeuLeu: 7.098 ± 0.0
1.42LeuMet: 1.42 ± 0.0
5.273LeuAsn: 5.273 ± 0.0
2.434LeuPro: 2.434 ± 0.0
3.853LeuGln: 3.853 ± 0.0
5.678LeuArg: 5.678 ± 0.0
6.287LeuSer: 6.287 ± 0.0
5.678LeuThr: 5.678 ± 0.0
8.518LeuVal: 8.518 ± 0.0
1.42LeuTrp: 1.42 ± 0.0
1.825LeuTyr: 1.825 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.434MetAla: 2.434 ± 0.0
0.406MetCys: 0.406 ± 0.0
2.231MetAsp: 2.231 ± 0.0
1.825MetGlu: 1.825 ± 0.0
0.608MetPhe: 0.608 ± 0.0
1.014MetGly: 1.014 ± 0.0
0.406MetHis: 0.406 ± 0.0
3.448MetIle: 3.448 ± 0.0
1.217MetLys: 1.217 ± 0.0
2.028MetLeu: 2.028 ± 0.0
0.406MetMet: 0.406 ± 0.0
1.217MetAsn: 1.217 ± 0.0
1.014MetPro: 1.014 ± 0.0
0.0MetGln: 0.0 ± 0.0
0.608MetArg: 0.608 ± 0.0
1.42MetSer: 1.42 ± 0.0
0.811MetThr: 0.811 ± 0.0
0.811MetVal: 0.811 ± 0.0
0.203MetTrp: 0.203 ± 0.0
0.811MetTyr: 0.811 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.448AsnAla: 3.448 ± 0.0
1.42AsnCys: 1.42 ± 0.0
2.434AsnAsp: 2.434 ± 0.0
6.084AsnGlu: 6.084 ± 0.0
1.825AsnPhe: 1.825 ± 0.0
4.462AsnGly: 4.462 ± 0.0
0.811AsnHis: 0.811 ± 0.0
3.853AsnIle: 3.853 ± 0.0
5.273AsnLys: 5.273 ± 0.0
7.706AsnLeu: 7.706 ± 0.0
1.42AsnMet: 1.42 ± 0.0
4.867AsnAsn: 4.867 ± 0.0
4.056AsnPro: 4.056 ± 0.0
3.042AsnGln: 3.042 ± 0.0
2.839AsnArg: 2.839 ± 0.0
3.448AsnSer: 3.448 ± 0.0
3.245AsnThr: 3.245 ± 0.0
3.853AsnVal: 3.853 ± 0.0
0.811AsnTrp: 0.811 ± 0.0
1.622AsnTyr: 1.622 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.231ProAla: 2.231 ± 0.0
1.622ProCys: 1.622 ± 0.0
2.839ProAsp: 2.839 ± 0.0
2.434ProGlu: 2.434 ± 0.0
1.014ProPhe: 1.014 ± 0.0
2.028ProGly: 2.028 ± 0.0
0.203ProHis: 0.203 ± 0.0
2.839ProIle: 2.839 ± 0.0
0.811ProLys: 0.811 ± 0.0
2.231ProLeu: 2.231 ± 0.0
0.406ProMet: 0.406 ± 0.0
2.636ProAsn: 2.636 ± 0.0
0.0ProPro: 0.0 ± 0.0
1.014ProGln: 1.014 ± 0.0
2.231ProArg: 2.231 ± 0.0
2.028ProSer: 2.028 ± 0.0
3.245ProThr: 3.245 ± 0.0
3.65ProVal: 3.65 ± 0.0
0.0ProTrp: 0.0 ± 0.0
0.811ProTyr: 0.811 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.636GlnAla: 2.636 ± 0.0
0.406GlnCys: 0.406 ± 0.0
1.825GlnAsp: 1.825 ± 0.0
1.42GlnGlu: 1.42 ± 0.0
1.825GlnPhe: 1.825 ± 0.0
1.622GlnGly: 1.622 ± 0.0
0.608GlnHis: 0.608 ± 0.0
2.028GlnIle: 2.028 ± 0.0
1.622GlnLys: 1.622 ± 0.0
3.65GlnLeu: 3.65 ± 0.0
0.608GlnMet: 0.608 ± 0.0
2.231GlnAsn: 2.231 ± 0.0
1.217GlnPro: 1.217 ± 0.0
0.811GlnGln: 0.811 ± 0.0
1.014GlnArg: 1.014 ± 0.0
2.434GlnSer: 2.434 ± 0.0
1.217GlnThr: 1.217 ± 0.0
2.636GlnVal: 2.636 ± 0.0
0.203GlnTrp: 0.203 ± 0.0
1.825GlnTyr: 1.825 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
4.259ArgAla: 4.259 ± 0.0
0.608ArgCys: 0.608 ± 0.0
3.042ArgAsp: 3.042 ± 0.0
2.231ArgGlu: 2.231 ± 0.0
1.622ArgPhe: 1.622 ± 0.0
2.839ArgGly: 2.839 ± 0.0
0.811ArgHis: 0.811 ± 0.0
5.678ArgIle: 5.678 ± 0.0
4.664ArgLys: 4.664 ± 0.0
6.49ArgLeu: 6.49 ± 0.0
1.014ArgMet: 1.014 ± 0.0
2.839ArgAsn: 2.839 ± 0.0
1.014ArgPro: 1.014 ± 0.0
1.42ArgGln: 1.42 ± 0.0
2.028ArgArg: 2.028 ± 0.0
3.042ArgSer: 3.042 ± 0.0
1.825ArgThr: 1.825 ± 0.0
3.65ArgVal: 3.65 ± 0.0
0.608ArgTrp: 0.608 ± 0.0
2.231ArgTyr: 2.231 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
2.839SerAla: 2.839 ± 0.0
1.014SerCys: 1.014 ± 0.0
2.636SerAsp: 2.636 ± 0.0
7.301SerGlu: 7.301 ± 0.0
3.245SerPhe: 3.245 ± 0.0
3.65SerGly: 3.65 ± 0.0
1.217SerHis: 1.217 ± 0.0
3.042SerIle: 3.042 ± 0.0
5.881SerLys: 5.881 ± 0.0
7.098SerLeu: 7.098 ± 0.0
2.028SerMet: 2.028 ± 0.0
3.65SerAsn: 3.65 ± 0.0
1.217SerPro: 1.217 ± 0.0
3.65SerGln: 3.65 ± 0.0
4.259SerArg: 4.259 ± 0.0
5.273SerSer: 5.273 ± 0.0
2.636SerThr: 2.636 ± 0.0
3.853SerVal: 3.853 ± 0.0
0.406SerTrp: 0.406 ± 0.0
2.636SerTyr: 2.636 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
2.434ThrAla: 2.434 ± 0.0
2.028ThrCys: 2.028 ± 0.0
2.231ThrAsp: 2.231 ± 0.0
5.07ThrGlu: 5.07 ± 0.0
1.014ThrPhe: 1.014 ± 0.0
4.056ThrGly: 4.056 ± 0.0
1.014ThrHis: 1.014 ± 0.0
3.448ThrIle: 3.448 ± 0.0
2.839ThrLys: 2.839 ± 0.0
3.65ThrLeu: 3.65 ± 0.0
1.42ThrMet: 1.42 ± 0.0
3.853ThrAsn: 3.853 ± 0.0
1.014ThrPro: 1.014 ± 0.0
0.811ThrGln: 0.811 ± 0.0
3.853ThrArg: 3.853 ± 0.0
3.042ThrSer: 3.042 ± 0.0
2.434ThrThr: 2.434 ± 0.0
4.462ThrVal: 4.462 ± 0.0
1.217ThrTrp: 1.217 ± 0.0
1.217ThrTyr: 1.217 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.462ValAla: 4.462 ± 0.0
1.014ValCys: 1.014 ± 0.0
3.448ValAsp: 3.448 ± 0.0
4.664ValGlu: 4.664 ± 0.0
3.65ValPhe: 3.65 ± 0.0
3.853ValGly: 3.853 ± 0.0
0.811ValHis: 0.811 ± 0.0
4.664ValIle: 4.664 ± 0.0
7.098ValLys: 7.098 ± 0.0
5.881ValLeu: 5.881 ± 0.0
1.622ValMet: 1.622 ± 0.0
5.07ValAsn: 5.07 ± 0.0
3.245ValPro: 3.245 ± 0.0
2.636ValGln: 2.636 ± 0.0
3.853ValArg: 3.853 ± 0.0
4.259ValSer: 4.259 ± 0.0
4.867ValThr: 4.867 ± 0.0
2.839ValVal: 2.839 ± 0.0
0.406ValTrp: 0.406 ± 0.0
0.811ValTyr: 0.811 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.811TrpAla: 0.811 ± 0.0
0.406TrpCys: 0.406 ± 0.0
0.811TrpAsp: 0.811 ± 0.0
1.42TrpGlu: 1.42 ± 0.0
0.608TrpPhe: 0.608 ± 0.0
0.203TrpGly: 0.203 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.406TrpIle: 0.406 ± 0.0
1.014TrpLys: 1.014 ± 0.0
1.014TrpLeu: 1.014 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.608TrpAsn: 0.608 ± 0.0
0.406TrpPro: 0.406 ± 0.0
0.406TrpGln: 0.406 ± 0.0
0.811TrpArg: 0.811 ± 0.0
0.406TrpSer: 0.406 ± 0.0
0.203TrpThr: 0.203 ± 0.0
1.217TrpVal: 1.217 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.203TrpTyr: 0.203 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.622TyrAla: 1.622 ± 0.0
1.217TyrCys: 1.217 ± 0.0
1.42TyrAsp: 1.42 ± 0.0
2.028TyrGlu: 2.028 ± 0.0
1.42TyrPhe: 1.42 ± 0.0
1.825TyrGly: 1.825 ± 0.0
0.406TyrHis: 0.406 ± 0.0
1.42TyrIle: 1.42 ± 0.0
1.42TyrLys: 1.42 ± 0.0
2.434TyrLeu: 2.434 ± 0.0
1.014TyrMet: 1.014 ± 0.0
2.028TyrAsn: 2.028 ± 0.0
1.42TyrPro: 1.42 ± 0.0
1.622TyrGln: 1.622 ± 0.0
1.014TyrArg: 1.014 ± 0.0
1.42TyrSer: 1.42 ± 0.0
2.434TyrThr: 2.434 ± 0.0
1.014TyrVal: 1.014 ± 0.0
0.406TyrTrp: 0.406 ± 0.0
1.014TyrTyr: 1.014 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (4932 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski