Podoviridae sp. ctcf755

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 48 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345BNS4|A0A345BNS4_9CAUD Uncharacterized protein OS=Podoviridae sp. ctcf755 OX=2675444 PE=4 SV=1
MM1 pKa = 7.6KK2 pKa = 10.38NLEE5 pKa = 3.96EE6 pKa = 5.16SILFLEE12 pKa = 4.51KK13 pKa = 9.44RR14 pKa = 11.84DD15 pKa = 3.63YY16 pKa = 10.28TVWIEE21 pKa = 4.99KK22 pKa = 10.16DD23 pKa = 3.24RR24 pKa = 11.84QTCSVAYY31 pKa = 9.06PRR33 pKa = 11.84QFGNYY38 pKa = 8.92AFIIIADD45 pKa = 3.98GEE47 pKa = 4.63KK48 pKa = 10.22IPSLKK53 pKa = 10.26TNDD56 pKa = 3.64EE57 pKa = 3.89KK58 pKa = 11.56DD59 pKa = 3.67VIRR62 pKa = 11.84FAFDD66 pKa = 2.72LWDD69 pKa = 5.05DD70 pKa = 5.0EE71 pKa = 4.75IQMTMDD77 pKa = 4.59DD78 pKa = 3.82NNNYY82 pKa = 9.22IFQLSHH88 pKa = 7.12DD89 pKa = 4.07VYY91 pKa = 10.68KK92 pKa = 10.78AHH94 pKa = 7.7RR95 pKa = 11.84YY96 pKa = 9.49CEE98 pKa = 4.11SDD100 pKa = 4.16CIEE103 pKa = 4.25EE104 pKa = 4.13PKK106 pKa = 10.74GFCGDD111 pKa = 3.58STEE114 pKa = 4.07ITYY117 pKa = 10.83KK118 pKa = 10.68DD119 pKa = 3.28YY120 pKa = 11.51VYY122 pKa = 11.18AKK124 pKa = 9.33EE125 pKa = 4.23HH126 pKa = 6.18EE127 pKa = 4.49LNFDD131 pKa = 3.19EE132 pKa = 4.68MEE134 pKa = 4.24YY135 pKa = 11.02GEE137 pKa = 4.23EE138 pKa = 3.99RR139 pKa = 11.84EE140 pKa = 4.03IYY142 pKa = 10.35LYY144 pKa = 10.28TFSIADD150 pKa = 3.73DD151 pKa = 4.52DD152 pKa = 4.72GDD154 pKa = 4.07YY155 pKa = 11.1KK156 pKa = 10.8IVDD159 pKa = 3.27QFYY162 pKa = 10.71SFEE165 pKa = 4.24KK166 pKa = 10.92VFF168 pKa = 3.79

Molecular weight: 20.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345BNU5|A0A345BNU5_9CAUD Uncharacterized protein OS=Podoviridae sp. ctcf755 OX=2675444 PE=4 SV=1
MM1 pKa = 7.5NNPTMMVQQLIRR13 pKa = 11.84QGLNPNQIMQRR24 pKa = 11.84FEE26 pKa = 3.73QMAANNPQIRR36 pKa = 11.84AALQQMKK43 pKa = 9.73QAQNQMRR50 pKa = 11.84QSGMTTQQFAMQYY63 pKa = 10.62AKK65 pKa = 10.75QNNINLNPYY74 pKa = 9.18VQMFNQSGINLL85 pKa = 3.74

Molecular weight: 9.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

48

0

48

11708

80

990

243.9

28.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.903 ± 0.324

1.486 ± 0.226

6.141 ± 0.248

8.362 ± 0.358

4.296 ± 0.187

5.048 ± 0.329

1.153 ± 0.129

9.113 ± 0.401

9.455 ± 0.517

8.165 ± 0.3

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.204 ± 0.169

7.619 ± 0.294

2.417 ± 0.188

3.98 ± 0.304

3.476 ± 0.245

5.714 ± 0.354

5.355 ± 0.382

5.056 ± 0.213

1.076 ± 0.158

4.98 ± 0.333
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski