Atopobium deltae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1442 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A133XSJ3|A0A133XSJ3_9ACTN Uncharacterized protein OS=Atopobium deltae OX=1393034 GN=HMPREF3192_01127 PE=4 SV=1
MM1 pKa = 6.91TQLDD5 pKa = 3.93SFIFKK10 pKa = 10.12IDD12 pKa = 3.53DD13 pKa = 3.52RR14 pKa = 11.84LEE16 pKa = 4.39GVGATLSLDD25 pKa = 3.18GRR27 pKa = 11.84LAQAQFDD34 pKa = 4.27LGDD37 pKa = 3.78HH38 pKa = 6.24EE39 pKa = 5.27FVLDD43 pKa = 4.27NGIAYY48 pKa = 10.41NLVLTNTAEE57 pKa = 5.0GILLTGIVKK66 pKa = 10.36ADD68 pKa = 3.47ATCPCDD74 pKa = 3.6RR75 pKa = 11.84CCEE78 pKa = 3.91PAQLQLSCEE87 pKa = 3.75VDD89 pKa = 3.09EE90 pKa = 5.33YY91 pKa = 11.95YY92 pKa = 11.11LFNKK96 pKa = 9.74PEE98 pKa = 4.11KK99 pKa = 10.18QHH101 pKa = 6.45LTDD104 pKa = 4.65LDD106 pKa = 3.72EE107 pKa = 5.26EE108 pKa = 4.49EE109 pKa = 4.99DD110 pKa = 3.39VDD112 pKa = 4.07YY113 pKa = 11.7SLVSAEE119 pKa = 4.04NTIDD123 pKa = 3.76LAPAIVSALVMEE135 pKa = 4.52VPYY138 pKa = 10.45IVLCDD143 pKa = 4.06DD144 pKa = 4.67DD145 pKa = 5.94CLGLCSRR152 pKa = 11.84CGANLNEE159 pKa = 4.63GSCEE163 pKa = 4.09CEE165 pKa = 3.41RR166 pKa = 11.84GANADD171 pKa = 3.6GADD174 pKa = 4.13AGNAAYY180 pKa = 10.04DD181 pKa = 4.02DD182 pKa = 4.19NGDD185 pKa = 4.85PIVQDD190 pKa = 3.87EE191 pKa = 4.39RR192 pKa = 11.84SKK194 pKa = 10.81PIPEE198 pKa = 4.75GPFSALGKK206 pKa = 9.5LHH208 pKa = 6.98FDD210 pKa = 3.74EE211 pKa = 5.29

Molecular weight: 22.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A133XVH1|A0A133XVH1_9ACTN Uncharacterized protein OS=Atopobium deltae OX=1393034 GN=HMPREF3192_00683 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.3QPNKK9 pKa = 8.42RR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84AKK14 pKa = 8.97THH16 pKa = 5.3GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.18GGRR28 pKa = 11.84DD29 pKa = 3.3VLSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.83GRR39 pKa = 11.84KK40 pKa = 8.88RR41 pKa = 11.84LTVV44 pKa = 3.11

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1442

0

1442

428962

34

1480

297.5

32.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.499 ± 0.074

1.492 ± 0.024

6.031 ± 0.06

5.794 ± 0.058

3.794 ± 0.039

6.748 ± 0.056

2.296 ± 0.03

5.912 ± 0.053

5.213 ± 0.061

9.363 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.52 ± 0.029

3.457 ± 0.046

4.021 ± 0.038

4.181 ± 0.05

5.187 ± 0.055

6.342 ± 0.05

5.996 ± 0.05

7.22 ± 0.057

0.977 ± 0.019

2.956 ± 0.043
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski