Amino acid dipepetide frequency for Fiji disease virus (isolate Sugarcane) (FDV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
1.306AlaAla: 1.306 ± 0.328
0.109AlaCys: 0.109 ± 0.098
1.851AlaAsp: 1.851 ± 0.517
2.177AlaGlu: 2.177 ± 0.415
2.286AlaPhe: 2.286 ± 0.397
1.198AlaGly: 1.198 ± 0.307
1.198AlaHis: 1.198 ± 0.251
4.028AlaIle: 4.028 ± 0.767
3.048AlaLys: 3.048 ± 0.624
4.573AlaLeu: 4.573 ± 0.453
0.544AlaMet: 0.544 ± 0.286
2.504AlaAsn: 2.504 ± 0.554
1.198AlaPro: 1.198 ± 0.292
0.762AlaGln: 0.762 ± 0.225
1.198AlaArg: 1.198 ± 0.375
2.286AlaSer: 2.286 ± 0.287
2.177AlaThr: 2.177 ± 0.372
1.633AlaVal: 1.633 ± 0.363
0.435AlaTrp: 0.435 ± 0.221
2.722AlaTyr: 2.722 ± 0.567
0.0AlaXaa: 0.0 ± 0.0
Cys
0.762CysAla: 0.762 ± 0.299
0.544CysCys: 0.544 ± 0.176
1.524CysAsp: 1.524 ± 0.302
0.762CysGlu: 0.762 ± 0.267
1.524CysPhe: 1.524 ± 0.334
0.544CysGly: 0.544 ± 0.217
0.327CysHis: 0.327 ± 0.178
0.653CysIle: 0.653 ± 0.202
0.98CysLys: 0.98 ± 0.323
1.524CysLeu: 1.524 ± 0.294
0.218CysMet: 0.218 ± 0.123
0.98CysAsn: 0.98 ± 0.3
0.653CysPro: 0.653 ± 0.185
0.218CysGln: 0.218 ± 0.135
0.871CysArg: 0.871 ± 0.28
0.98CysSer: 0.98 ± 0.281
0.544CysThr: 0.544 ± 0.359
1.633CysVal: 1.633 ± 0.41
0.327CysTrp: 0.327 ± 0.143
0.762CysTyr: 0.762 ± 0.306
0.0CysXaa: 0.0 ± 0.0
Asp
2.177AspAla: 2.177 ± 0.525
0.435AspCys: 0.435 ± 0.122
3.811AspAsp: 3.811 ± 0.841
5.988AspGlu: 5.988 ± 0.621
3.048AspPhe: 3.048 ± 0.751
2.94AspGly: 2.94 ± 0.592
0.98AspHis: 0.98 ± 0.296
4.355AspIle: 4.355 ± 0.611
4.355AspLys: 4.355 ± 0.671
5.661AspLeu: 5.661 ± 0.522
1.633AspMet: 1.633 ± 0.506
3.811AspAsn: 3.811 ± 0.49
1.633AspPro: 1.633 ± 0.324
3.266AspGln: 3.266 ± 0.601
2.286AspArg: 2.286 ± 0.575
4.355AspSer: 4.355 ± 0.647
2.831AspThr: 2.831 ± 0.789
4.355AspVal: 4.355 ± 0.611
0.544AspTrp: 0.544 ± 0.214
3.919AspTyr: 3.919 ± 0.527
0.0AspXaa: 0.0 ± 0.0
Glu
2.395GluAla: 2.395 ± 0.556
1.415GluCys: 1.415 ± 0.494
2.177GluAsp: 2.177 ± 0.319
3.157GluGlu: 3.157 ± 0.547
3.593GluPhe: 3.593 ± 0.603
1.524GluGly: 1.524 ± 0.298
2.177GluHis: 2.177 ± 0.364
5.988GluIle: 5.988 ± 0.938
4.573GluLys: 4.573 ± 0.882
7.512GluLeu: 7.512 ± 0.966
1.198GluMet: 1.198 ± 0.377
2.94GluAsn: 2.94 ± 0.611
1.415GluPro: 1.415 ± 0.435
2.722GluGln: 2.722 ± 0.939
2.94GluArg: 2.94 ± 0.286
4.137GluSer: 4.137 ± 0.851
3.484GluThr: 3.484 ± 0.783
3.811GluVal: 3.811 ± 0.397
0.653GluTrp: 0.653 ± 0.199
3.157GluTyr: 3.157 ± 0.419
0.0GluXaa: 0.0 ± 0.0
Phe
1.96PheAla: 1.96 ± 0.652
1.198PheCys: 1.198 ± 0.361
5.008PheAsp: 5.008 ± 0.657
5.226PheGlu: 5.226 ± 0.782
2.722PhePhe: 2.722 ± 0.436
4.573PheGly: 4.573 ± 0.833
1.306PheHis: 1.306 ± 0.424
3.484PheIle: 3.484 ± 0.588
3.375PheLys: 3.375 ± 0.506
5.553PheLeu: 5.553 ± 0.563
1.089PheMet: 1.089 ± 0.433
5.879PheAsn: 5.879 ± 0.872
1.742PhePro: 1.742 ± 0.51
0.871PheGln: 0.871 ± 0.225
1.742PheArg: 1.742 ± 0.485
4.464PheSer: 4.464 ± 0.674
3.811PheThr: 3.811 ± 0.73
3.919PheVal: 3.919 ± 0.569
0.653PheTrp: 0.653 ± 0.207
1.633PheTyr: 1.633 ± 0.452
0.109PheXaa: 0.109 ± 0.102
Gly
1.96GlyAla: 1.96 ± 0.523
0.762GlyCys: 0.762 ± 0.269
2.613GlyAsp: 2.613 ± 0.469
2.286GlyGlu: 2.286 ± 0.386
2.722GlyPhe: 2.722 ± 0.508
1.851GlyGly: 1.851 ± 0.445
0.762GlyHis: 0.762 ± 0.196
4.355GlyIle: 4.355 ± 0.356
3.484GlyLys: 3.484 ± 0.448
3.811GlyLeu: 3.811 ± 0.454
0.762GlyMet: 0.762 ± 0.229
3.266GlyAsn: 3.266 ± 0.641
1.089GlyPro: 1.089 ± 0.253
0.871GlyGln: 0.871 ± 0.32
1.306GlyArg: 1.306 ± 0.257
2.069GlySer: 2.069 ± 0.436
2.613GlyThr: 2.613 ± 0.358
2.395GlyVal: 2.395 ± 0.38
0.109GlyTrp: 0.109 ± 0.098
3.157GlyTyr: 3.157 ± 0.466
0.0GlyXaa: 0.0 ± 0.0
His
1.089HisAla: 1.089 ± 0.185
0.327HisCys: 0.327 ± 0.16
1.198HisAsp: 1.198 ± 0.344
1.089HisGlu: 1.089 ± 0.34
0.98HisPhe: 0.98 ± 0.195
1.633HisGly: 1.633 ± 0.379
0.327HisHis: 0.327 ± 0.177
0.98HisIle: 0.98 ± 0.297
1.198HisLys: 1.198 ± 0.374
2.613HisLeu: 2.613 ± 0.416
0.218HisMet: 0.218 ± 0.114
1.851HisAsn: 1.851 ± 0.448
0.871HisPro: 0.871 ± 0.295
0.762HisGln: 0.762 ± 0.184
1.089HisArg: 1.089 ± 0.287
2.177HisSer: 2.177 ± 0.369
1.524HisThr: 1.524 ± 0.409
1.415HisVal: 1.415 ± 0.353
0.0HisTrp: 0.0 ± 0.0
1.524HisTyr: 1.524 ± 0.297
0.0HisXaa: 0.0 ± 0.0
Ile
2.395IleAla: 2.395 ± 0.535
0.871IleCys: 0.871 ± 0.194
4.682IleAsp: 4.682 ± 0.735
5.444IleGlu: 5.444 ± 0.368
3.919IlePhe: 3.919 ± 0.698
4.79IleGly: 4.79 ± 0.458
0.871IleHis: 0.871 ± 0.302
5.444IleIle: 5.444 ± 1.112
6.532IleLys: 6.532 ± 0.921
7.077IleLeu: 7.077 ± 0.621
1.415IleMet: 1.415 ± 0.383
5.988IleAsn: 5.988 ± 0.583
2.395IlePro: 2.395 ± 0.415
3.048IleGln: 3.048 ± 0.709
3.375IleArg: 3.375 ± 0.677
5.988IleSer: 5.988 ± 0.383
4.573IleThr: 4.573 ± 0.913
4.028IleVal: 4.028 ± 0.644
0.218IleTrp: 0.218 ± 0.139
3.375IleTyr: 3.375 ± 0.729
0.0IleXaa: 0.0 ± 0.0
Lys
2.395LysAla: 2.395 ± 0.338
1.96LysCys: 1.96 ± 0.428
4.137LysAsp: 4.137 ± 0.576
3.702LysGlu: 3.702 ± 0.865
5.661LysPhe: 5.661 ± 0.595
2.286LysGly: 2.286 ± 0.248
1.198LysHis: 1.198 ± 0.257
6.968LysIle: 6.968 ± 0.75
3.484LysLys: 3.484 ± 0.499
7.295LysLeu: 7.295 ± 0.732
2.286LysMet: 2.286 ± 0.411
4.137LysAsn: 4.137 ± 0.572
3.157LysPro: 3.157 ± 0.641
2.613LysGln: 2.613 ± 0.592
3.266LysArg: 3.266 ± 0.339
4.79LysSer: 4.79 ± 0.815
4.464LysThr: 4.464 ± 0.653
4.899LysVal: 4.899 ± 0.95
0.435LysTrp: 0.435 ± 0.242
4.028LysTyr: 4.028 ± 0.766
0.0LysXaa: 0.0 ± 0.0
Leu
3.702LeuAla: 3.702 ± 0.574
1.633LeuCys: 1.633 ± 0.31
7.186LeuAsp: 7.186 ± 0.778
5.226LeuGlu: 5.226 ± 0.843
6.315LeuPhe: 6.315 ± 0.601
3.593LeuGly: 3.593 ± 0.553
2.831LeuHis: 2.831 ± 0.521
9.363LeuIle: 9.363 ± 0.748
7.512LeuLys: 7.512 ± 0.792
9.036LeuLeu: 9.036 ± 1.259
1.96LeuMet: 1.96 ± 0.354
8.71LeuAsn: 8.71 ± 0.827
3.702LeuPro: 3.702 ± 0.508
2.177LeuGln: 2.177 ± 0.447
4.355LeuArg: 4.355 ± 0.737
8.492LeuSer: 8.492 ± 1.024
5.226LeuThr: 5.226 ± 0.75
4.464LeuVal: 4.464 ± 0.895
0.544LeuTrp: 0.544 ± 0.239
4.899LeuTyr: 4.899 ± 0.796
0.0LeuXaa: 0.0 ± 0.0
Met
0.653MetAla: 0.653 ± 0.224
0.544MetCys: 0.544 ± 0.189
1.089MetAsp: 1.089 ± 0.372
1.524MetGlu: 1.524 ± 0.546
1.96MetPhe: 1.96 ± 0.404
0.762MetGly: 0.762 ± 0.235
0.98MetHis: 0.98 ± 0.295
1.524MetIle: 1.524 ± 0.644
2.177MetLys: 2.177 ± 0.376
2.504MetLeu: 2.504 ± 0.507
0.762MetMet: 0.762 ± 0.218
1.96MetAsn: 1.96 ± 0.403
0.544MetPro: 0.544 ± 0.158
0.435MetGln: 0.435 ± 0.154
0.544MetArg: 0.544 ± 0.275
2.395MetSer: 2.395 ± 0.247
0.653MetThr: 0.653 ± 0.292
0.762MetVal: 0.762 ± 0.17
0.109MetTrp: 0.109 ± 0.087
1.089MetTyr: 1.089 ± 0.325
0.0MetXaa: 0.0 ± 0.0
Asn
4.464AsnAla: 4.464 ± 0.42
1.524AsnCys: 1.524 ± 0.315
5.008AsnAsp: 5.008 ± 0.831
5.879AsnGlu: 5.879 ± 1.006
3.157AsnPhe: 3.157 ± 0.744
3.593AsnGly: 3.593 ± 0.487
1.633AsnHis: 1.633 ± 0.344
4.573AsnIle: 4.573 ± 0.815
5.77AsnLys: 5.77 ± 0.831
7.512AsnLeu: 7.512 ± 0.89
1.524AsnMet: 1.524 ± 0.402
4.137AsnAsn: 4.137 ± 0.408
2.286AsnPro: 2.286 ± 0.332
2.286AsnGln: 2.286 ± 0.387
3.375AsnArg: 3.375 ± 0.529
5.661AsnSer: 5.661 ± 1.068
3.484AsnThr: 3.484 ± 0.813
4.79AsnVal: 4.79 ± 0.641
0.435AsnTrp: 0.435 ± 0.122
1.96AsnTyr: 1.96 ± 0.199
0.0AsnXaa: 0.0 ± 0.0
Pro
1.198ProAla: 1.198 ± 0.326
0.544ProCys: 0.544 ± 0.183
1.742ProAsp: 1.742 ± 0.486
1.633ProGlu: 1.633 ± 0.484
1.96ProPhe: 1.96 ± 0.36
0.871ProGly: 0.871 ± 0.198
0.327ProHis: 0.327 ± 0.211
1.633ProIle: 1.633 ± 0.28
2.177ProLys: 2.177 ± 0.409
3.266ProLeu: 3.266 ± 0.35
0.653ProMet: 0.653 ± 0.197
2.722ProAsn: 2.722 ± 0.435
0.327ProPro: 0.327 ± 0.257
0.653ProGln: 0.653 ± 0.278
1.306ProArg: 1.306 ± 0.34
3.375ProSer: 3.375 ± 0.692
2.613ProThr: 2.613 ± 0.588
1.524ProVal: 1.524 ± 0.29
0.109ProTrp: 0.109 ± 0.099
1.198ProTyr: 1.198 ± 0.249
0.0ProXaa: 0.0 ± 0.0
Gln
1.306GlnAla: 1.306 ± 0.358
0.218GlnCys: 0.218 ± 0.151
1.633GlnAsp: 1.633 ± 0.381
0.98GlnGlu: 0.98 ± 0.364
2.831GlnPhe: 2.831 ± 0.721
1.306GlnGly: 1.306 ± 0.219
0.762GlnHis: 0.762 ± 0.264
2.613GlnIle: 2.613 ± 0.484
2.177GlnLys: 2.177 ± 0.402
2.831GlnLeu: 2.831 ± 0.609
1.306GlnMet: 1.306 ± 0.4
2.395GlnAsn: 2.395 ± 0.533
0.98GlnPro: 0.98 ± 0.219
1.198GlnGln: 1.198 ± 0.228
1.415GlnArg: 1.415 ± 0.282
2.069GlnSer: 2.069 ± 0.48
1.524GlnThr: 1.524 ± 0.399
1.742GlnVal: 1.742 ± 0.483
0.109GlnTrp: 0.109 ± 0.126
1.524GlnTyr: 1.524 ± 0.286
0.0GlnXaa: 0.0 ± 0.0
Arg
2.177ArgAla: 2.177 ± 0.588
0.544ArgCys: 0.544 ± 0.175
1.96ArgAsp: 1.96 ± 0.504
1.742ArgGlu: 1.742 ± 0.476
2.94ArgPhe: 2.94 ± 0.432
1.415ArgGly: 1.415 ± 0.366
0.871ArgHis: 0.871 ± 0.327
3.266ArgIle: 3.266 ± 0.684
3.484ArgLys: 3.484 ± 0.544
4.573ArgLeu: 4.573 ± 0.516
1.633ArgMet: 1.633 ± 0.502
2.722ArgAsn: 2.722 ± 0.52
0.98ArgPro: 0.98 ± 0.255
0.762ArgGln: 0.762 ± 0.183
2.286ArgArg: 2.286 ± 0.486
3.048ArgSer: 3.048 ± 0.487
1.742ArgThr: 1.742 ± 0.497
1.851ArgVal: 1.851 ± 0.478
0.218ArgTrp: 0.218 ± 0.114
2.395ArgTyr: 2.395 ± 0.365
0.0ArgXaa: 0.0 ± 0.0
Ser
2.504SerAla: 2.504 ± 0.359
1.633SerCys: 1.633 ± 0.583
6.097SerAsp: 6.097 ± 0.789
4.573SerGlu: 4.573 ± 0.386
4.355SerPhe: 4.355 ± 0.483
2.831SerGly: 2.831 ± 0.504
1.742SerHis: 1.742 ± 0.361
5.553SerIle: 5.553 ± 0.765
6.75SerLys: 6.75 ± 0.652
7.73SerLeu: 7.73 ± 1.028
1.524SerMet: 1.524 ± 0.418
5.117SerAsn: 5.117 ± 0.586
1.306SerPro: 1.306 ± 0.242
2.831SerGln: 2.831 ± 0.575
2.395SerArg: 2.395 ± 0.49
7.403SerSer: 7.403 ± 1.017
4.79SerThr: 4.79 ± 0.954
5.008SerVal: 5.008 ± 0.448
0.653SerTrp: 0.653 ± 0.3
4.028SerTyr: 4.028 ± 0.568
0.0SerXaa: 0.0 ± 0.0
Thr
1.524ThrAla: 1.524 ± 0.408
0.327ThrCys: 0.327 ± 0.15
2.395ThrAsp: 2.395 ± 0.358
2.94ThrGlu: 2.94 ± 0.384
2.395ThrPhe: 2.395 ± 0.486
1.742ThrGly: 1.742 ± 0.294
1.742ThrHis: 1.742 ± 0.499
3.593ThrIle: 3.593 ± 0.69
4.028ThrLys: 4.028 ± 0.42
6.75ThrLeu: 6.75 ± 0.743
1.306ThrMet: 1.306 ± 0.273
4.682ThrAsn: 4.682 ± 0.98
1.851ThrPro: 1.851 ± 0.548
1.415ThrGln: 1.415 ± 0.28
2.94ThrArg: 2.94 ± 0.657
5.988ThrSer: 5.988 ± 0.466
3.593ThrThr: 3.593 ± 1.046
3.593ThrVal: 3.593 ± 0.707
0.218ThrTrp: 0.218 ± 0.114
3.157ThrTyr: 3.157 ± 0.873
0.0ThrXaa: 0.0 ± 0.0
Val
1.198ValAla: 1.198 ± 0.197
1.089ValCys: 1.089 ± 0.332
4.137ValAsp: 4.137 ± 0.66
3.157ValGlu: 3.157 ± 0.971
4.028ValPhe: 4.028 ± 0.555
2.504ValGly: 2.504 ± 0.521
1.089ValHis: 1.089 ± 0.214
4.899ValIle: 4.899 ± 0.804
4.028ValLys: 4.028 ± 0.715
5.553ValLeu: 5.553 ± 0.783
1.742ValMet: 1.742 ± 0.325
5.008ValAsn: 5.008 ± 0.386
1.633ValPro: 1.633 ± 0.572
1.96ValGln: 1.96 ± 0.398
2.504ValArg: 2.504 ± 0.6
4.246ValSer: 4.246 ± 0.637
3.266ValThr: 3.266 ± 0.653
3.593ValVal: 3.593 ± 0.695
0.218ValTrp: 0.218 ± 0.133
2.504ValTyr: 2.504 ± 0.285
0.0ValXaa: 0.0 ± 0.0
Trp
0.218TrpAla: 0.218 ± 0.137
0.0TrpCys: 0.0 ± 0.0
0.218TrpAsp: 0.218 ± 0.15
0.218TrpGlu: 0.218 ± 0.159
0.218TrpPhe: 0.218 ± 0.11
0.109TrpGly: 0.109 ± 0.087
0.109TrpHis: 0.109 ± 0.102
0.435TrpIle: 0.435 ± 0.193
0.762TrpLys: 0.762 ± 0.168
0.435TrpLeu: 0.435 ± 0.201
0.0TrpMet: 0.0 ± 0.0
0.98TrpAsn: 0.98 ± 0.27
0.653TrpPro: 0.653 ± 0.186
0.327TrpGln: 0.327 ± 0.153
0.0TrpArg: 0.0 ± 0.0
0.653TrpSer: 0.653 ± 0.219
0.435TrpThr: 0.435 ± 0.206
0.327TrpVal: 0.327 ± 0.199
0.109TrpTrp: 0.109 ± 0.099
0.327TrpTyr: 0.327 ± 0.19
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.851TyrAla: 1.851 ± 0.281
0.653TyrCys: 0.653 ± 0.213
3.919TyrAsp: 3.919 ± 0.763
3.266TyrGlu: 3.266 ± 0.457
3.702TyrPhe: 3.702 ± 0.59
2.177TyrGly: 2.177 ± 0.229
1.633TyrHis: 1.633 ± 0.332
2.722TyrIle: 2.722 ± 0.538
3.157TyrLys: 3.157 ± 0.461
5.117TyrLeu: 5.117 ± 0.967
1.089TyrMet: 1.089 ± 0.334
3.266TyrAsn: 3.266 ± 0.628
1.415TyrPro: 1.415 ± 0.409
1.742TyrGln: 1.742 ± 0.47
1.415TyrArg: 1.415 ± 0.36
4.246TyrSer: 4.246 ± 0.998
2.831TyrThr: 2.831 ± 0.619
2.722TyrVal: 2.722 ± 0.467
0.435TyrTrp: 0.435 ± 0.225
2.395TyrTyr: 2.395 ± 0.696
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.109XaaLys: 0.109 ± 0.102
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 12 proteins (9186 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski