Planococcus rifietoensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planococcus

Average proteome isoelectric point is 5.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3386 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0U2YV83|A0A0U2YV83_9BACL RNA methyltransferase TrmH OS=Planococcus rifietoensis OX=200991 GN=AUC31_09775 PE=4 SV=1
MM1 pKa = 7.56KK2 pKa = 10.37KK3 pKa = 10.32FNLMFLAAASMAALAACSSGDD24 pKa = 3.57EE25 pKa = 4.23EE26 pKa = 5.1ASGGSGSEE34 pKa = 4.07GSADD38 pKa = 3.41VDD40 pKa = 5.55EE41 pKa = 4.52ITAWAWDD48 pKa = 3.58PAFNIAALEE57 pKa = 4.13NAKK60 pKa = 9.89EE61 pKa = 4.09AYY63 pKa = 10.29NGDD66 pKa = 2.9GDD68 pKa = 4.27YY69 pKa = 11.04EE70 pKa = 4.56VNIIEE75 pKa = 4.5NAQDD79 pKa = 5.51DD80 pKa = 4.9IIQKK84 pKa = 10.54LNTGLSSGTTNGMPNIVLIEE104 pKa = 4.37DD105 pKa = 3.41YY106 pKa = 10.36RR107 pKa = 11.84AQSFLQAYY115 pKa = 8.23PDD117 pKa = 3.89AFHH120 pKa = 7.54PLTDD124 pKa = 4.61VINSDD129 pKa = 4.22DD130 pKa = 3.72FADD133 pKa = 3.78YY134 pKa = 10.8KK135 pKa = 10.78IATTSYY141 pKa = 10.91DD142 pKa = 3.31GEE144 pKa = 4.49QYY146 pKa = 11.35GLPFDD151 pKa = 4.24SGVAALYY158 pKa = 10.74VRR160 pKa = 11.84TDD162 pKa = 3.48YY163 pKa = 11.52LEE165 pKa = 4.05EE166 pKa = 5.61AGYY169 pKa = 10.44SVEE172 pKa = 4.85DD173 pKa = 3.52VTDD176 pKa = 3.66ITWQEE181 pKa = 3.99YY182 pKa = 10.34IEE184 pKa = 4.35IGKK187 pKa = 9.3DD188 pKa = 3.19VKK190 pKa = 10.77EE191 pKa = 4.02ATGKK195 pKa = 10.46NMLTLDD201 pKa = 4.5PNDD204 pKa = 3.71LAQVRR209 pKa = 11.84MMIQTNGSWYY219 pKa = 10.17VEE221 pKa = 4.27EE222 pKa = 5.93DD223 pKa = 3.24GSTPNIAGNEE233 pKa = 4.01TLEE236 pKa = 4.98AGFEE240 pKa = 4.5TYY242 pKa = 10.74KK243 pKa = 11.25EE244 pKa = 4.05MMDD247 pKa = 3.43ADD249 pKa = 3.42IAKK252 pKa = 9.81IVSDD256 pKa = 3.53WSQFVGAFNSGEE268 pKa = 4.24VASVPTGNWITPSVKK283 pKa = 9.92QAADD287 pKa = 3.49QSGKK291 pKa = 8.65WAVVPMPRR299 pKa = 11.84LDD301 pKa = 3.44MEE303 pKa = 4.69GAVNASNLGGSSWYY317 pKa = 9.91VLNVDD322 pKa = 4.65GKK324 pKa = 9.78EE325 pKa = 3.91QAADD329 pKa = 3.56FLLNTFGSNPEE340 pKa = 4.13LYY342 pKa = 8.53QTLVEE347 pKa = 5.37DD348 pKa = 3.86IGALGTYY355 pKa = 10.03SPAAEE360 pKa = 4.02GDD362 pKa = 3.47AYY364 pKa = 10.64AVEE367 pKa = 5.1DD368 pKa = 4.37EE369 pKa = 4.8FFGGQQLLTDD379 pKa = 4.45LSTWTDD385 pKa = 3.62EE386 pKa = 4.3IPAVNYY392 pKa = 10.0GLHH395 pKa = 6.22TYY397 pKa = 10.28AIEE400 pKa = 5.42DD401 pKa = 3.55ILVTGMQDD409 pKa = 3.54YY410 pKa = 11.43LNGAEE415 pKa = 4.93LDD417 pKa = 3.98TVLEE421 pKa = 4.19NVQGQAEE428 pKa = 4.28AQLKK432 pKa = 9.34

Molecular weight: 46.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0U2Z9T2|A0A0U2Z9T2_9BACL GTPase Der OS=Planococcus rifietoensis OX=200991 GN=engA PE=3 SV=1
MM1 pKa = 7.61TLRR4 pKa = 11.84TYY6 pKa = 10.57QPNKK10 pKa = 8.74RR11 pKa = 11.84KK12 pKa = 9.54HH13 pKa = 5.99SKK15 pKa = 8.91VHH17 pKa = 5.68GFRR20 pKa = 11.84ARR22 pKa = 11.84MSTKK26 pKa = 9.71NGRR29 pKa = 11.84RR30 pKa = 11.84VIAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 8.8GRR40 pKa = 11.84KK41 pKa = 8.75VLSAA45 pKa = 4.05

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3386

0

3386

996273

37

1561

294.2

32.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.555 ± 0.041

0.549 ± 0.011

5.416 ± 0.038

7.962 ± 0.054

4.506 ± 0.037

7.318 ± 0.04

2.067 ± 0.022

6.948 ± 0.039

5.619 ± 0.035

9.906 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.916 ± 0.02

3.569 ± 0.025

3.82 ± 0.026

3.861 ± 0.028

4.417 ± 0.032

5.851 ± 0.025

5.337 ± 0.026

7.111 ± 0.028

1.052 ± 0.017

3.22 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski