Amino acid dipepetide frequency for Pleospora typhicola fusarivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.375AlaAla: 3.375 ± 0.226
0.482AlaCys: 0.482 ± 0.257
3.857AlaAsp: 3.857 ± 0.031
3.375AlaGlu: 3.375 ± 3.269
1.929AlaPhe: 1.929 ± 0.999
3.375AlaGly: 3.375 ± 0.788
1.929AlaHis: 1.929 ± 1.03
4.339AlaIle: 4.339 ± 1.74
6.268AlaLys: 6.268 ± 4.767
5.786AlaLeu: 5.786 ± 1.061
0.482AlaMet: 0.482 ± 0.257
2.893AlaAsn: 2.893 ± 1.498
5.786AlaPro: 5.786 ± 0.047
1.929AlaGln: 1.929 ± 0.016
4.339AlaArg: 4.339 ± 0.289
5.786AlaSer: 5.786 ± 2.996
3.375AlaThr: 3.375 ± 0.226
5.786AlaVal: 5.786 ± 0.047
1.929AlaTrp: 1.929 ± 0.016
2.893AlaTyr: 2.893 ± 0.484
0.0AlaXaa: 0.0 ± 0.0
Cys
0.482CysAla: 0.482 ± 0.257
0.0CysCys: 0.0 ± 0.0
0.482CysAsp: 0.482 ± 0.757
0.0CysGlu: 0.0 ± 0.0
0.482CysPhe: 0.482 ± 0.257
0.964CysGly: 0.964 ± 0.515
0.964CysHis: 0.964 ± 0.515
0.964CysIle: 0.964 ± 0.515
0.0CysLys: 0.0 ± 0.0
0.482CysLeu: 0.482 ± 0.757
0.482CysMet: 0.482 ± 0.257
0.0CysAsn: 0.0 ± 0.0
0.964CysPro: 0.964 ± 0.499
0.482CysGln: 0.482 ± 0.257
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
0.964CysThr: 0.964 ± 0.499
0.482CysVal: 0.482 ± 0.257
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.893AspAla: 2.893 ± 0.484
0.482AspCys: 0.482 ± 0.757
3.857AspAsp: 3.857 ± 3.011
3.857AspGlu: 3.857 ± 3.011
2.893AspPhe: 2.893 ± 0.531
2.893AspGly: 2.893 ± 1.498
1.446AspHis: 1.446 ± 0.242
5.786AspIle: 5.786 ± 0.967
2.411AspLys: 2.411 ± 0.741
10.125AspLeu: 10.125 ± 0.336
0.964AspMet: 0.964 ± 0.499
1.446AspAsn: 1.446 ± 0.772
3.375AspPro: 3.375 ± 0.788
0.482AspGln: 0.482 ± 0.257
2.411AspArg: 2.411 ± 0.741
5.304AspSer: 5.304 ± 1.225
2.893AspThr: 2.893 ± 0.531
3.857AspVal: 3.857 ± 1.046
1.446AspTrp: 1.446 ± 0.772
1.446AspTyr: 1.446 ± 0.772
0.0AspXaa: 0.0 ± 0.0
Glu
2.893GluAla: 2.893 ± 2.512
0.482GluCys: 0.482 ± 0.257
2.411GluAsp: 2.411 ± 0.741
1.929GluGlu: 1.929 ± 0.016
1.929GluPhe: 1.929 ± 1.03
0.0GluGly: 0.0 ± 0.0
0.964GluHis: 0.964 ± 0.515
1.929GluIle: 1.929 ± 2.013
3.375GluLys: 3.375 ± 3.269
7.232GluLeu: 7.232 ± 4.252
0.482GluMet: 0.482 ± 0.257
0.964GluAsn: 0.964 ± 0.499
1.446GluPro: 1.446 ± 0.242
2.411GluGln: 2.411 ± 1.287
2.411GluArg: 2.411 ± 0.741
4.822GluSer: 4.822 ± 3.511
1.446GluThr: 1.446 ± 0.772
2.411GluVal: 2.411 ± 0.273
1.446GluTrp: 1.446 ± 0.772
1.929GluTyr: 1.929 ± 0.999
0.0GluXaa: 0.0 ± 0.0
Phe
2.893PheAla: 2.893 ± 0.531
1.446PheCys: 1.446 ± 0.242
3.857PheAsp: 3.857 ± 1.997
2.411PheGlu: 2.411 ± 1.755
0.482PhePhe: 0.482 ± 0.257
1.446PheGly: 1.446 ± 0.772
0.964PheHis: 0.964 ± 0.515
4.339PheIle: 4.339 ± 2.317
5.304PheLys: 5.304 ± 1.225
4.339PheLeu: 4.339 ± 1.303
1.446PheMet: 1.446 ± 0.772
0.964PheAsn: 0.964 ± 0.515
2.893PhePro: 2.893 ± 0.531
1.446PheGln: 1.446 ± 0.242
3.375PheArg: 3.375 ± 0.226
1.929PheSer: 1.929 ± 1.03
1.929PheThr: 1.929 ± 1.03
4.339PheVal: 4.339 ± 2.317
0.964PheTrp: 0.964 ± 0.499
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
4.339GlyAla: 4.339 ± 0.289
0.0GlyCys: 0.0 ± 0.0
3.375GlyAsp: 3.375 ± 0.226
0.964GlyGlu: 0.964 ± 0.499
3.375GlyPhe: 3.375 ± 0.788
1.446GlyGly: 1.446 ± 0.772
1.446GlyHis: 1.446 ± 0.242
1.929GlyIle: 1.929 ± 1.03
4.339GlyLys: 4.339 ± 1.74
4.822GlyLeu: 4.822 ± 0.546
1.929GlyMet: 1.929 ± 1.03
1.929GlyAsn: 1.929 ± 0.999
1.446GlyPro: 1.446 ± 0.772
1.446GlyGln: 1.446 ± 0.242
1.446GlyArg: 1.446 ± 0.772
5.786GlySer: 5.786 ± 0.047
1.929GlyThr: 1.929 ± 1.03
1.929GlyVal: 1.929 ± 1.03
0.482GlyTrp: 0.482 ± 0.257
1.446GlyTyr: 1.446 ± 0.772
0.0GlyXaa: 0.0 ± 0.0
His
2.411HisAla: 2.411 ± 0.741
0.482HisCys: 0.482 ± 0.257
2.893HisAsp: 2.893 ± 0.531
1.446HisGlu: 1.446 ± 0.242
0.964HisPhe: 0.964 ± 0.515
0.482HisGly: 0.482 ± 0.257
0.964HisHis: 0.964 ± 0.515
1.446HisIle: 1.446 ± 0.772
1.446HisLys: 1.446 ± 0.242
1.446HisLeu: 1.446 ± 0.242
0.0HisMet: 0.0 ± 0.0
0.964HisAsn: 0.964 ± 0.515
1.446HisPro: 1.446 ± 0.772
0.482HisGln: 0.482 ± 0.257
0.482HisArg: 0.482 ± 0.257
1.446HisSer: 1.446 ± 0.772
0.482HisThr: 0.482 ± 0.257
1.929HisVal: 1.929 ± 1.03
0.482HisTrp: 0.482 ± 0.257
1.929HisTyr: 1.929 ± 1.03
0.0HisXaa: 0.0 ± 0.0
Ile
6.268IleAla: 6.268 ± 0.71
0.0IleCys: 0.0 ± 0.0
2.893IleAsp: 2.893 ± 1.545
2.411IleGlu: 2.411 ± 0.741
3.375IlePhe: 3.375 ± 0.788
2.411IleGly: 2.411 ± 1.287
0.964IleHis: 0.964 ± 0.515
3.375IleIle: 3.375 ± 1.802
3.857IleLys: 3.857 ± 1.997
5.304IleLeu: 5.304 ± 0.804
1.446IleMet: 1.446 ± 0.772
3.375IleAsn: 3.375 ± 0.226
2.411IlePro: 2.411 ± 0.273
0.964IleGln: 0.964 ± 0.499
4.339IleArg: 4.339 ± 0.289
6.75IleSer: 6.75 ± 2.59
2.411IleThr: 2.411 ± 1.287
2.893IleVal: 2.893 ± 0.531
0.964IleTrp: 0.964 ± 0.499
0.482IleTyr: 0.482 ± 0.257
0.0IleXaa: 0.0 ± 0.0
Lys
6.75LysAla: 6.75 ± 8.566
0.482LysCys: 0.482 ± 0.257
4.339LysAsp: 4.339 ± 1.74
1.929LysGlu: 1.929 ± 0.999
0.482LysPhe: 0.482 ± 0.257
3.857LysGly: 3.857 ± 0.031
0.964LysHis: 0.964 ± 0.499
2.411LysIle: 2.411 ± 0.741
5.304LysLys: 5.304 ± 0.804
7.232LysLeu: 7.232 ± 4.252
1.446LysMet: 1.446 ± 0.772
1.929LysAsn: 1.929 ± 0.016
2.893LysPro: 2.893 ± 1.498
1.446LysGln: 1.446 ± 0.242
4.339LysArg: 4.339 ± 3.768
6.268LysSer: 6.268 ± 1.319
3.857LysThr: 3.857 ± 0.983
6.268LysVal: 6.268 ± 0.304
1.446LysTrp: 1.446 ± 0.772
2.411LysTyr: 2.411 ± 1.287
0.0LysXaa: 0.0 ± 0.0
Leu
8.679LeuAla: 8.679 ± 0.437
0.0LeuCys: 0.0 ± 0.0
7.232LeuAsp: 7.232 ± 0.819
3.857LeuGlu: 3.857 ± 1.046
3.375LeuPhe: 3.375 ± 1.802
5.304LeuGly: 5.304 ± 0.211
3.857LeuHis: 3.857 ± 0.031
5.304LeuIle: 5.304 ± 1.818
5.786LeuLys: 5.786 ± 5.024
13.983LeuLeu: 13.983 ± 3.41
2.411LeuMet: 2.411 ± 0.273
4.822LeuAsn: 4.822 ± 2.496
5.786LeuPro: 5.786 ± 0.967
3.375LeuGln: 3.375 ± 1.24
2.893LeuArg: 2.893 ± 0.484
11.572LeuSer: 11.572 ± 2.122
5.304LeuThr: 5.304 ± 2.239
9.161LeuVal: 9.161 ± 1.849
2.411LeuTrp: 2.411 ± 1.287
2.893LeuTyr: 2.893 ± 0.531
0.0LeuXaa: 0.0 ± 0.0
Met
1.446MetAla: 1.446 ± 0.242
0.482MetCys: 0.482 ± 0.257
1.929MetAsp: 1.929 ± 0.016
0.964MetGlu: 0.964 ± 0.515
0.0MetPhe: 0.0 ± 0.0
1.446MetGly: 1.446 ± 0.772
0.0MetHis: 0.0 ± 0.0
1.446MetIle: 1.446 ± 0.772
0.482MetLys: 0.482 ± 0.257
1.446MetLeu: 1.446 ± 0.772
0.0MetMet: 0.0 ± 0.0
1.929MetAsn: 1.929 ± 0.999
1.446MetPro: 1.446 ± 0.772
0.964MetGln: 0.964 ± 0.515
0.0MetArg: 0.0 ± 0.0
3.375MetSer: 3.375 ± 0.788
0.964MetThr: 0.964 ± 0.515
3.375MetVal: 3.375 ± 0.788
0.482MetTrp: 0.482 ± 0.257
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.411AsnAla: 2.411 ± 0.741
0.0AsnCys: 0.0 ± 0.0
3.375AsnAsp: 3.375 ± 1.24
2.893AsnGlu: 2.893 ± 2.512
2.893AsnPhe: 2.893 ± 1.545
2.893AsnGly: 2.893 ± 0.484
1.929AsnHis: 1.929 ± 0.016
2.411AsnIle: 2.411 ± 0.741
2.411AsnLys: 2.411 ± 0.741
5.304AsnLeu: 5.304 ± 0.804
1.446AsnMet: 1.446 ± 0.242
1.929AsnAsn: 1.929 ± 0.016
1.446AsnPro: 1.446 ± 0.772
0.0AsnGln: 0.0 ± 0.0
1.929AsnArg: 1.929 ± 0.016
2.893AsnSer: 2.893 ± 1.498
1.929AsnThr: 1.929 ± 0.999
3.375AsnVal: 3.375 ± 0.788
0.0AsnTrp: 0.0 ± 0.0
3.375AsnTyr: 3.375 ± 1.802
0.0AsnXaa: 0.0 ± 0.0
Pro
2.411ProAla: 2.411 ± 0.273
0.0ProCys: 0.0 ± 0.0
4.822ProAsp: 4.822 ± 1.56
3.375ProGlu: 3.375 ± 1.24
2.411ProPhe: 2.411 ± 0.273
1.929ProGly: 1.929 ± 0.999
1.446ProHis: 1.446 ± 0.772
2.893ProIle: 2.893 ± 1.545
2.411ProLys: 2.411 ± 0.273
6.268ProLeu: 6.268 ± 0.304
0.964ProMet: 0.964 ± 0.212
2.893ProAsn: 2.893 ± 1.545
3.375ProPro: 3.375 ± 3.269
1.446ProGln: 1.446 ± 0.772
3.857ProArg: 3.857 ± 2.06
5.304ProSer: 5.304 ± 3.253
2.893ProThr: 2.893 ± 1.498
1.929ProVal: 1.929 ± 0.016
0.0ProTrp: 0.0 ± 0.0
1.929ProTyr: 1.929 ± 2.013
0.0ProXaa: 0.0 ± 0.0
Gln
1.446GlnAla: 1.446 ± 0.242
0.482GlnCys: 0.482 ± 0.257
1.446GlnAsp: 1.446 ± 1.256
1.446GlnGlu: 1.446 ± 0.772
1.929GlnPhe: 1.929 ± 0.016
0.964GlnGly: 0.964 ± 0.499
0.964GlnHis: 0.964 ± 0.515
0.964GlnIle: 0.964 ± 0.515
0.964GlnLys: 0.964 ± 0.499
3.857GlnLeu: 3.857 ± 2.06
0.964GlnMet: 0.964 ± 0.515
1.929GlnAsn: 1.929 ± 0.016
1.446GlnPro: 1.446 ± 0.242
0.964GlnGln: 0.964 ± 0.499
1.446GlnArg: 1.446 ± 1.256
1.929GlnSer: 1.929 ± 0.016
1.929GlnThr: 1.929 ± 0.999
1.446GlnVal: 1.446 ± 0.242
0.0GlnTrp: 0.0 ± 0.0
0.964GlnTyr: 0.964 ± 0.515
0.0GlnXaa: 0.0 ± 0.0
Arg
3.375ArgAla: 3.375 ± 0.226
0.482ArgCys: 0.482 ± 0.257
1.929ArgAsp: 1.929 ± 0.016
4.339ArgGlu: 4.339 ± 1.74
4.822ArgPhe: 4.822 ± 1.482
1.446ArgGly: 1.446 ± 0.242
2.411ArgHis: 2.411 ± 1.287
1.929ArgIle: 1.929 ± 0.016
6.75ArgLys: 6.75 ± 0.452
4.822ArgLeu: 4.822 ± 1.482
0.964ArgMet: 0.964 ± 0.426
0.964ArgAsn: 0.964 ± 0.499
1.929ArgPro: 1.929 ± 0.999
0.482ArgGln: 0.482 ± 0.757
1.446ArgArg: 1.446 ± 0.772
2.893ArgSer: 2.893 ± 0.531
4.339ArgThr: 4.339 ± 1.303
1.929ArgVal: 1.929 ± 1.03
1.446ArgTrp: 1.446 ± 0.772
1.929ArgTyr: 1.929 ± 0.016
0.0ArgXaa: 0.0 ± 0.0
Ser
5.786SerAla: 5.786 ± 1.061
1.446SerCys: 1.446 ± 0.242
5.786SerAsp: 5.786 ± 0.967
3.375SerGlu: 3.375 ± 1.24
6.268SerPhe: 6.268 ± 0.304
5.304SerGly: 5.304 ± 0.804
0.0SerHis: 0.0 ± 0.0
5.786SerIle: 5.786 ± 2.075
4.339SerLys: 4.339 ± 1.303
9.643SerLeu: 9.643 ± 0.078
2.893SerMet: 2.893 ± 0.531
5.786SerAsn: 5.786 ± 0.967
2.893SerPro: 2.893 ± 0.531
1.929SerGln: 1.929 ± 0.999
6.268SerArg: 6.268 ± 1.319
8.679SerSer: 8.679 ± 1.451
6.268SerThr: 6.268 ± 1.724
6.268SerVal: 6.268 ± 0.304
1.929SerTrp: 1.929 ± 0.999
3.375SerTyr: 3.375 ± 0.226
0.0SerXaa: 0.0 ± 0.0
Thr
3.375ThrAla: 3.375 ± 0.788
0.0ThrCys: 0.0 ± 0.0
1.929ThrAsp: 1.929 ± 0.016
0.964ThrGlu: 0.964 ± 0.515
1.929ThrPhe: 1.929 ± 0.016
3.857ThrGly: 3.857 ± 0.031
0.0ThrHis: 0.0 ± 0.0
3.857ThrIle: 3.857 ± 0.031
1.929ThrLys: 1.929 ± 0.999
6.268ThrLeu: 6.268 ± 0.71
1.446ThrMet: 1.446 ± 0.242
2.893ThrAsn: 2.893 ± 0.531
3.857ThrPro: 3.857 ± 1.046
2.893ThrGln: 2.893 ± 1.498
1.929ThrArg: 1.929 ± 0.999
5.786ThrSer: 5.786 ± 1.061
3.857ThrThr: 3.857 ± 2.06
3.857ThrVal: 3.857 ± 0.031
0.964ThrTrp: 0.964 ± 0.499
0.482ThrTyr: 0.482 ± 0.257
0.0ThrXaa: 0.0 ± 0.0
Val
5.786ValAla: 5.786 ± 0.047
1.446ValCys: 1.446 ± 0.242
2.411ValAsp: 2.411 ± 0.273
1.929ValGlu: 1.929 ± 0.016
5.304ValPhe: 5.304 ± 0.211
3.375ValGly: 3.375 ± 1.802
1.446ValHis: 1.446 ± 0.772
2.411ValIle: 2.411 ± 1.287
3.857ValLys: 3.857 ± 1.046
4.339ValLeu: 4.339 ± 1.303
0.964ValMet: 0.964 ± 0.515
3.375ValAsn: 3.375 ± 0.226
4.822ValPro: 4.822 ± 1.482
3.375ValGln: 3.375 ± 1.802
3.857ValArg: 3.857 ± 0.031
8.197ValSer: 8.197 ± 2.349
2.893ValThr: 2.893 ± 1.545
8.679ValVal: 8.679 ± 3.62
1.929ValTrp: 1.929 ± 1.03
2.893ValTyr: 2.893 ± 0.531
0.0ValXaa: 0.0 ± 0.0
Trp
0.482TrpAla: 0.482 ± 0.757
0.0TrpCys: 0.0 ± 0.0
0.482TrpAsp: 0.482 ± 0.257
0.482TrpGlu: 0.482 ± 0.257
0.482TrpPhe: 0.482 ± 0.257
0.964TrpGly: 0.964 ± 0.515
0.0TrpHis: 0.0 ± 0.0
0.964TrpIle: 0.964 ± 0.499
1.929TrpLys: 1.929 ± 0.016
2.893TrpLeu: 2.893 ± 0.484
0.482TrpMet: 0.482 ± 0.257
1.446TrpAsn: 1.446 ± 0.772
1.446TrpPro: 1.446 ± 0.772
0.482TrpGln: 0.482 ± 0.257
0.964TrpArg: 0.964 ± 0.515
1.446TrpSer: 1.446 ± 0.772
1.446TrpThr: 1.446 ± 0.772
0.964TrpVal: 0.964 ± 0.499
0.0TrpTrp: 0.0 ± 0.0
1.929TrpTyr: 1.929 ± 0.016
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.411TyrAla: 2.411 ± 0.273
0.0TyrCys: 0.0 ± 0.0
0.964TyrAsp: 0.964 ± 0.499
0.964TyrGlu: 0.964 ± 0.515
1.446TyrPhe: 1.446 ± 0.242
1.446TyrGly: 1.446 ± 0.772
0.964TyrHis: 0.964 ± 0.515
2.411TyrIle: 2.411 ± 0.273
2.893TyrLys: 2.893 ± 0.531
2.411TyrLeu: 2.411 ± 1.287
0.482TyrMet: 0.482 ± 0.257
2.411TyrAsn: 2.411 ± 0.273
1.929TyrPro: 1.929 ± 0.999
0.482TyrGln: 0.482 ± 0.257
2.893TyrArg: 2.893 ± 0.531
3.857TyrSer: 3.857 ± 0.031
0.964TyrThr: 0.964 ± 0.499
2.411TyrVal: 2.411 ± 1.287
0.964TyrTrp: 0.964 ± 0.499
2.893TyrTyr: 2.893 ± 1.545
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2075 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski