Amino acid dipepetide frequency for Hubei tick virus 3

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.694AlaAla: 2.694 ± 0.0
0.337AlaCys: 0.337 ± 0.0
4.04AlaAsp: 4.04 ± 0.0
4.04AlaGlu: 4.04 ± 0.0
4.714AlaPhe: 4.714 ± 0.0
5.051AlaGly: 5.051 ± 0.0
1.347AlaHis: 1.347 ± 0.0
3.704AlaIle: 3.704 ± 0.0
3.03AlaLys: 3.03 ± 0.0
6.734AlaLeu: 6.734 ± 0.0
0.337AlaMet: 0.337 ± 0.0
2.694AlaAsn: 2.694 ± 0.0
3.367AlaPro: 3.367 ± 0.0
3.704AlaGln: 3.704 ± 0.0
4.377AlaArg: 4.377 ± 0.0
5.387AlaSer: 5.387 ± 0.0
2.02AlaThr: 2.02 ± 0.0
4.714AlaVal: 4.714 ± 0.0
0.337AlaTrp: 0.337 ± 0.0
1.684AlaTyr: 1.684 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.347CysAla: 1.347 ± 0.0
0.673CysCys: 0.673 ± 0.0
0.673CysAsp: 0.673 ± 0.0
0.337CysGlu: 0.337 ± 0.0
1.684CysPhe: 1.684 ± 0.0
1.684CysGly: 1.684 ± 0.0
0.337CysHis: 0.337 ± 0.0
1.684CysIle: 1.684 ± 0.0
1.347CysLys: 1.347 ± 0.0
2.02CysLeu: 2.02 ± 0.0
0.337CysMet: 0.337 ± 0.0
1.347CysAsn: 1.347 ± 0.0
1.347CysPro: 1.347 ± 0.0
0.673CysGln: 0.673 ± 0.0
2.02CysArg: 2.02 ± 0.0
2.357CysSer: 2.357 ± 0.0
0.337CysThr: 0.337 ± 0.0
0.673CysVal: 0.673 ± 0.0
1.01CysTrp: 1.01 ± 0.0
0.673CysTyr: 0.673 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.03AspAla: 3.03 ± 0.0
1.01AspCys: 1.01 ± 0.0
3.367AspAsp: 3.367 ± 0.0
2.694AspGlu: 2.694 ± 0.0
3.367AspPhe: 3.367 ± 0.0
3.704AspGly: 3.704 ± 0.0
1.684AspHis: 1.684 ± 0.0
2.02AspIle: 2.02 ± 0.0
1.01AspLys: 1.01 ± 0.0
6.734AspLeu: 6.734 ± 0.0
1.01AspMet: 1.01 ± 0.0
1.684AspAsn: 1.684 ± 0.0
3.704AspPro: 3.704 ± 0.0
0.673AspGln: 0.673 ± 0.0
1.347AspArg: 1.347 ± 0.0
2.694AspSer: 2.694 ± 0.0
3.367AspThr: 3.367 ± 0.0
4.377AspVal: 4.377 ± 0.0
1.01AspTrp: 1.01 ± 0.0
3.367AspTyr: 3.367 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.03GluAla: 3.03 ± 0.0
1.684GluCys: 1.684 ± 0.0
3.367GluAsp: 3.367 ± 0.0
4.04GluGlu: 4.04 ± 0.0
4.04GluPhe: 4.04 ± 0.0
2.02GluGly: 2.02 ± 0.0
2.02GluHis: 2.02 ± 0.0
3.704GluIle: 3.704 ± 0.0
0.673GluLys: 0.673 ± 0.0
8.418GluLeu: 8.418 ± 0.0
1.347GluMet: 1.347 ± 0.0
1.684GluAsn: 1.684 ± 0.0
2.694GluPro: 2.694 ± 0.0
3.03GluGln: 3.03 ± 0.0
3.03GluArg: 3.03 ± 0.0
6.061GluSer: 6.061 ± 0.0
0.673GluThr: 0.673 ± 0.0
4.04GluVal: 4.04 ± 0.0
1.347GluTrp: 1.347 ± 0.0
3.03GluTyr: 3.03 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.367PheAla: 3.367 ± 0.0
1.01PheCys: 1.01 ± 0.0
4.377PheAsp: 4.377 ± 0.0
4.714PheGlu: 4.714 ± 0.0
1.347PhePhe: 1.347 ± 0.0
4.714PheGly: 4.714 ± 0.0
0.673PheHis: 0.673 ± 0.0
2.02PheIle: 2.02 ± 0.0
1.684PheLys: 1.684 ± 0.0
4.377PheLeu: 4.377 ± 0.0
1.01PheMet: 1.01 ± 0.0
3.03PheAsn: 3.03 ± 0.0
2.02PhePro: 2.02 ± 0.0
2.357PheGln: 2.357 ± 0.0
4.377PheArg: 4.377 ± 0.0
3.367PheSer: 3.367 ± 0.0
1.347PheThr: 1.347 ± 0.0
4.714PheVal: 4.714 ± 0.0
0.337PheTrp: 0.337 ± 0.0
2.694PheTyr: 2.694 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
1.347GlyAla: 1.347 ± 0.0
1.684GlyCys: 1.684 ± 0.0
4.377GlyAsp: 4.377 ± 0.0
3.03GlyGlu: 3.03 ± 0.0
1.347GlyPhe: 1.347 ± 0.0
3.704GlyGly: 3.704 ± 0.0
0.673GlyHis: 0.673 ± 0.0
4.04GlyIle: 4.04 ± 0.0
2.694GlyLys: 2.694 ± 0.0
6.397GlyLeu: 6.397 ± 0.0
1.01GlyMet: 1.01 ± 0.0
1.347GlyAsn: 1.347 ± 0.0
1.347GlyPro: 1.347 ± 0.0
2.694GlyGln: 2.694 ± 0.0
3.367GlyArg: 3.367 ± 0.0
3.704GlySer: 3.704 ± 0.0
2.357GlyThr: 2.357 ± 0.0
6.397GlyVal: 6.397 ± 0.0
0.337GlyTrp: 0.337 ± 0.0
2.357GlyTyr: 2.357 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.337HisAla: 0.337 ± 0.0
0.673HisCys: 0.673 ± 0.0
0.337HisAsp: 0.337 ± 0.0
2.02HisGlu: 2.02 ± 0.0
2.357HisPhe: 2.357 ± 0.0
1.347HisGly: 1.347 ± 0.0
1.347HisHis: 1.347 ± 0.0
1.684HisIle: 1.684 ± 0.0
0.337HisLys: 0.337 ± 0.0
3.03HisLeu: 3.03 ± 0.0
0.337HisMet: 0.337 ± 0.0
0.673HisAsn: 0.673 ± 0.0
1.01HisPro: 1.01 ± 0.0
1.347HisGln: 1.347 ± 0.0
1.684HisArg: 1.684 ± 0.0
1.684HisSer: 1.684 ± 0.0
0.673HisThr: 0.673 ± 0.0
2.02HisVal: 2.02 ± 0.0
0.337HisTrp: 0.337 ± 0.0
1.01HisTyr: 1.01 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.704IleAla: 3.704 ± 0.0
1.347IleCys: 1.347 ± 0.0
3.367IleAsp: 3.367 ± 0.0
3.704IleGlu: 3.704 ± 0.0
2.357IlePhe: 2.357 ± 0.0
3.367IleGly: 3.367 ± 0.0
0.673IleHis: 0.673 ± 0.0
2.694IleIle: 2.694 ± 0.0
3.03IleLys: 3.03 ± 0.0
4.377IleLeu: 4.377 ± 0.0
0.337IleMet: 0.337 ± 0.0
4.04IleAsn: 4.04 ± 0.0
3.704IlePro: 3.704 ± 0.0
1.684IleGln: 1.684 ± 0.0
3.367IleArg: 3.367 ± 0.0
4.04IleSer: 4.04 ± 0.0
2.02IleThr: 2.02 ± 0.0
5.051IleVal: 5.051 ± 0.0
0.0IleTrp: 0.0 ± 0.0
1.347IleTyr: 1.347 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
6.734LysAla: 6.734 ± 0.0
1.684LysCys: 1.684 ± 0.0
2.02LysAsp: 2.02 ± 0.0
2.357LysGlu: 2.357 ± 0.0
2.694LysPhe: 2.694 ± 0.0
3.03LysGly: 3.03 ± 0.0
1.347LysHis: 1.347 ± 0.0
2.357LysIle: 2.357 ± 0.0
1.347LysLys: 1.347 ± 0.0
2.694LysLeu: 2.694 ± 0.0
1.347LysMet: 1.347 ± 0.0
1.01LysAsn: 1.01 ± 0.0
1.684LysPro: 1.684 ± 0.0
1.01LysGln: 1.01 ± 0.0
1.347LysArg: 1.347 ± 0.0
4.714LysSer: 4.714 ± 0.0
3.03LysThr: 3.03 ± 0.0
3.367LysVal: 3.367 ± 0.0
1.01LysTrp: 1.01 ± 0.0
2.694LysTyr: 2.694 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
8.418LeuAla: 8.418 ± 0.0
3.03LeuCys: 3.03 ± 0.0
3.704LeuAsp: 3.704 ± 0.0
5.724LeuGlu: 5.724 ± 0.0
4.377LeuPhe: 4.377 ± 0.0
4.04LeuGly: 4.04 ± 0.0
1.684LeuHis: 1.684 ± 0.0
4.377LeuIle: 4.377 ± 0.0
6.061LeuLys: 6.061 ± 0.0
7.744LeuLeu: 7.744 ± 0.0
2.02LeuMet: 2.02 ± 0.0
4.377LeuAsn: 4.377 ± 0.0
4.04LeuPro: 4.04 ± 0.0
4.04LeuGln: 4.04 ± 0.0
5.051LeuArg: 5.051 ± 0.0
9.091LeuSer: 9.091 ± 0.0
4.714LeuThr: 4.714 ± 0.0
4.04LeuVal: 4.04 ± 0.0
0.673LeuTrp: 0.673 ± 0.0
3.03LeuTyr: 3.03 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.02MetAla: 2.02 ± 0.0
1.01MetCys: 1.01 ± 0.0
0.673MetAsp: 0.673 ± 0.0
1.01MetGlu: 1.01 ± 0.0
2.694MetPhe: 2.694 ± 0.0
1.684MetGly: 1.684 ± 0.0
0.337MetHis: 0.337 ± 0.0
1.684MetIle: 1.684 ± 0.0
1.347MetLys: 1.347 ± 0.0
2.02MetLeu: 2.02 ± 0.0
0.673MetMet: 0.673 ± 0.0
1.347MetAsn: 1.347 ± 0.0
0.673MetPro: 0.673 ± 0.0
0.337MetGln: 0.337 ± 0.0
2.357MetArg: 2.357 ± 0.0
0.673MetSer: 0.673 ± 0.0
1.01MetThr: 1.01 ± 0.0
1.01MetVal: 1.01 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.337MetTyr: 0.337 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.357AsnAla: 2.357 ± 0.0
2.02AsnCys: 2.02 ± 0.0
2.02AsnAsp: 2.02 ± 0.0
1.684AsnGlu: 1.684 ± 0.0
2.02AsnPhe: 2.02 ± 0.0
1.684AsnGly: 1.684 ± 0.0
1.01AsnHis: 1.01 ± 0.0
3.704AsnIle: 3.704 ± 0.0
1.347AsnLys: 1.347 ± 0.0
2.357AsnLeu: 2.357 ± 0.0
0.337AsnMet: 0.337 ± 0.0
2.02AsnAsn: 2.02 ± 0.0
2.694AsnPro: 2.694 ± 0.0
3.03AsnGln: 3.03 ± 0.0
2.694AsnArg: 2.694 ± 0.0
1.684AsnSer: 1.684 ± 0.0
1.01AsnThr: 1.01 ± 0.0
4.377AsnVal: 4.377 ± 0.0
1.684AsnTrp: 1.684 ± 0.0
2.694AsnTyr: 2.694 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.357ProAla: 2.357 ± 0.0
0.673ProCys: 0.673 ± 0.0
2.02ProAsp: 2.02 ± 0.0
1.684ProGlu: 1.684 ± 0.0
2.02ProPhe: 2.02 ± 0.0
0.673ProGly: 0.673 ± 0.0
2.02ProHis: 2.02 ± 0.0
2.694ProIle: 2.694 ± 0.0
2.02ProLys: 2.02 ± 0.0
6.397ProLeu: 6.397 ± 0.0
2.357ProMet: 2.357 ± 0.0
2.02ProAsn: 2.02 ± 0.0
1.347ProPro: 1.347 ± 0.0
2.02ProGln: 2.02 ± 0.0
2.357ProArg: 2.357 ± 0.0
3.704ProSer: 3.704 ± 0.0
4.377ProThr: 4.377 ± 0.0
6.734ProVal: 6.734 ± 0.0
0.0ProTrp: 0.0 ± 0.0
2.357ProTyr: 2.357 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
4.04GlnAla: 4.04 ± 0.0
1.347GlnCys: 1.347 ± 0.0
2.02GlnAsp: 2.02 ± 0.0
2.02GlnGlu: 2.02 ± 0.0
1.347GlnPhe: 1.347 ± 0.0
1.347GlnGly: 1.347 ± 0.0
1.684GlnHis: 1.684 ± 0.0
2.357GlnIle: 2.357 ± 0.0
2.02GlnLys: 2.02 ± 0.0
3.03GlnLeu: 3.03 ± 0.0
1.01GlnMet: 1.01 ± 0.0
1.347GlnAsn: 1.347 ± 0.0
3.704GlnPro: 3.704 ± 0.0
1.684GlnGln: 1.684 ± 0.0
3.367GlnArg: 3.367 ± 0.0
1.01GlnSer: 1.01 ± 0.0
1.684GlnThr: 1.684 ± 0.0
3.704GlnVal: 3.704 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
2.02GlnTyr: 2.02 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
4.04ArgAla: 4.04 ± 0.0
0.337ArgCys: 0.337 ± 0.0
4.04ArgAsp: 4.04 ± 0.0
4.714ArgGlu: 4.714 ± 0.0
3.03ArgPhe: 3.03 ± 0.0
2.694ArgGly: 2.694 ± 0.0
0.673ArgHis: 0.673 ± 0.0
2.694ArgIle: 2.694 ± 0.0
3.367ArgLys: 3.367 ± 0.0
6.397ArgLeu: 6.397 ± 0.0
1.684ArgMet: 1.684 ± 0.0
2.02ArgAsn: 2.02 ± 0.0
1.01ArgPro: 1.01 ± 0.0
2.694ArgGln: 2.694 ± 0.0
3.704ArgArg: 3.704 ± 0.0
4.377ArgSer: 4.377 ± 0.0
2.357ArgThr: 2.357 ± 0.0
4.714ArgVal: 4.714 ± 0.0
1.01ArgTrp: 1.01 ± 0.0
5.051ArgTyr: 5.051 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.367SerAla: 3.367 ± 0.0
1.684SerCys: 1.684 ± 0.0
4.714SerAsp: 4.714 ± 0.0
4.714SerGlu: 4.714 ± 0.0
5.387SerPhe: 5.387 ± 0.0
4.04SerGly: 4.04 ± 0.0
2.02SerHis: 2.02 ± 0.0
4.04SerIle: 4.04 ± 0.0
3.03SerLys: 3.03 ± 0.0
5.051SerLeu: 5.051 ± 0.0
3.704SerMet: 3.704 ± 0.0
2.694SerAsn: 2.694 ± 0.0
3.03SerPro: 3.03 ± 0.0
1.684SerGln: 1.684 ± 0.0
2.694SerArg: 2.694 ± 0.0
4.377SerSer: 4.377 ± 0.0
4.714SerThr: 4.714 ± 0.0
5.724SerVal: 5.724 ± 0.0
1.01SerTrp: 1.01 ± 0.0
4.714SerTyr: 4.714 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
1.347ThrAla: 1.347 ± 0.0
0.0ThrCys: 0.0 ± 0.0
1.684ThrAsp: 1.684 ± 0.0
2.02ThrGlu: 2.02 ± 0.0
1.684ThrPhe: 1.684 ± 0.0
3.367ThrGly: 3.367 ± 0.0
1.347ThrHis: 1.347 ± 0.0
3.03ThrIle: 3.03 ± 0.0
3.367ThrLys: 3.367 ± 0.0
3.704ThrLeu: 3.704 ± 0.0
1.01ThrMet: 1.01 ± 0.0
1.347ThrAsn: 1.347 ± 0.0
4.377ThrPro: 4.377 ± 0.0
1.684ThrGln: 1.684 ± 0.0
3.704ThrArg: 3.704 ± 0.0
3.704ThrSer: 3.704 ± 0.0
3.03ThrThr: 3.03 ± 0.0
3.704ThrVal: 3.704 ± 0.0
1.347ThrTrp: 1.347 ± 0.0
2.02ThrTyr: 2.02 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
6.061ValAla: 6.061 ± 0.0
0.337ValCys: 0.337 ± 0.0
2.694ValAsp: 2.694 ± 0.0
6.397ValGlu: 6.397 ± 0.0
3.367ValPhe: 3.367 ± 0.0
2.357ValGly: 2.357 ± 0.0
0.673ValHis: 0.673 ± 0.0
3.367ValIle: 3.367 ± 0.0
4.714ValLys: 4.714 ± 0.0
5.051ValLeu: 5.051 ± 0.0
1.684ValMet: 1.684 ± 0.0
3.704ValAsn: 3.704 ± 0.0
5.724ValPro: 5.724 ± 0.0
3.03ValGln: 3.03 ± 0.0
6.061ValArg: 6.061 ± 0.0
5.387ValSer: 5.387 ± 0.0
6.734ValThr: 6.734 ± 0.0
6.397ValVal: 6.397 ± 0.0
0.673ValTrp: 0.673 ± 0.0
4.04ValTyr: 4.04 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.337TrpAla: 0.337 ± 0.0
0.337TrpCys: 0.337 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.673TrpGlu: 0.673 ± 0.0
1.01TrpPhe: 1.01 ± 0.0
0.0TrpGly: 0.0 ± 0.0
1.01TrpHis: 1.01 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.673TrpLys: 0.673 ± 0.0
1.684TrpLeu: 1.684 ± 0.0
0.0TrpMet: 0.0 ± 0.0
1.347TrpAsn: 1.347 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.673TrpGln: 0.673 ± 0.0
2.02TrpArg: 2.02 ± 0.0
1.347TrpSer: 1.347 ± 0.0
0.673TrpThr: 0.673 ± 0.0
1.01TrpVal: 1.01 ± 0.0
0.337TrpTrp: 0.337 ± 0.0
1.01TrpTyr: 1.01 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.377TyrAla: 4.377 ± 0.0
1.684TyrCys: 1.684 ± 0.0
2.357TyrAsp: 2.357 ± 0.0
2.357TyrGlu: 2.357 ± 0.0
2.694TyrPhe: 2.694 ± 0.0
3.704TyrGly: 3.704 ± 0.0
1.684TyrHis: 1.684 ± 0.0
2.357TyrIle: 2.357 ± 0.0
4.377TyrLys: 4.377 ± 0.0
2.02TyrLeu: 2.02 ± 0.0
1.01TyrMet: 1.01 ± 0.0
2.694TyrAsn: 2.694 ± 0.0
2.357TyrPro: 2.357 ± 0.0
2.694TyrGln: 2.694 ± 0.0
1.684TyrArg: 1.684 ± 0.0
3.03TyrSer: 3.03 ± 0.0
1.347TyrThr: 1.347 ± 0.0
2.02TyrVal: 2.02 ± 0.0
1.684TyrTrp: 1.684 ± 0.0
2.357TyrTyr: 2.357 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2971 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski