Tubeweb spider associated circular virus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykolovirus; Gemykolovirus segpa1

Average proteome isoelectric point is 7.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A346BP67|A0A346BP67_9VIRU Putative capsid protein OS=Tubeweb spider associated circular virus 1 OX=2293308 PE=4 SV=1
MM1 pKa = 6.51TRR3 pKa = 11.84RR4 pKa = 11.84YY5 pKa = 10.35KK6 pKa = 10.62LDD8 pKa = 3.18NVEE11 pKa = 4.9YY12 pKa = 10.44ILLTYY17 pKa = 10.29SDD19 pKa = 5.02CPVEE23 pKa = 4.9FDD25 pKa = 3.46PQGIIVAVVRR35 pKa = 11.84SGGVYY40 pKa = 9.4RR41 pKa = 11.84LGRR44 pKa = 11.84EE45 pKa = 3.8LHH47 pKa = 5.79QNGMPHH53 pKa = 5.19YY54 pKa = 9.74HH55 pKa = 6.46CFVWWVGGFSHH66 pKa = 7.9PDD68 pKa = 2.94AGQLFMVSGRR78 pKa = 11.84RR79 pKa = 11.84CNIKK83 pKa = 10.43KK84 pKa = 8.56FTANPGRR91 pKa = 11.84RR92 pKa = 11.84WDD94 pKa = 3.79YY95 pKa = 8.01VGKK98 pKa = 10.48YY99 pKa = 9.56AGHH102 pKa = 7.07KK103 pKa = 9.76DD104 pKa = 3.16GHH106 pKa = 5.64YY107 pKa = 10.66LIGDD111 pKa = 3.37QCEE114 pKa = 4.13RR115 pKa = 11.84PGGDD119 pKa = 3.31KK120 pKa = 10.7DD121 pKa = 4.18DD122 pKa = 4.47SEE124 pKa = 4.46RR125 pKa = 11.84TQTDD129 pKa = 2.27IWSEE133 pKa = 3.96IINATNEE140 pKa = 4.03GEE142 pKa = 4.33FFEE145 pKa = 5.14KK146 pKa = 10.5LAALAPKK153 pKa = 10.22QLGCNFGSLKK163 pKa = 10.72LYY165 pKa = 10.76ADD167 pKa = 3.52WKK169 pKa = 9.79YY170 pKa = 10.4RR171 pKa = 11.84PEE173 pKa = 4.03VADD176 pKa = 3.67YY177 pKa = 8.97EE178 pKa = 4.6SPPGIFEE185 pKa = 4.11PVYY188 pKa = 11.09DD189 pKa = 3.77LTNWSEE195 pKa = 4.07ANLGRR200 pKa = 11.84VEE202 pKa = 3.92GRR204 pKa = 11.84PRR206 pKa = 11.84GLVLFGATRR215 pKa = 11.84LGKK218 pKa = 7.65TVWARR223 pKa = 11.84SLGKK227 pKa = 9.74HH228 pKa = 5.68NYY230 pKa = 8.93FAGLFNLDD238 pKa = 4.56DD239 pKa = 4.25FSEE242 pKa = 4.36SAEE245 pKa = 3.92YY246 pKa = 10.42AIFDD250 pKa = 4.19DD251 pKa = 4.0MSGGFSFFPSYY262 pKa = 9.2KK263 pKa = 9.6QWMGGQFQFTVTDD276 pKa = 3.65KK277 pKa = 10.77FKK279 pKa = 10.89HH280 pKa = 5.41KK281 pKa = 10.03RR282 pKa = 11.84TVRR285 pKa = 11.84WGKK288 pKa = 7.37PTIWLCNTDD297 pKa = 5.47PRR299 pKa = 11.84LDD301 pKa = 3.34WYY303 pKa = 10.98KK304 pKa = 10.58PGSSPDD310 pKa = 3.78FGWMEE315 pKa = 3.92EE316 pKa = 4.02NADD319 pKa = 3.77FVEE322 pKa = 4.27LTEE325 pKa = 4.52TIFRR329 pKa = 11.84ANRR332 pKa = 11.84EE333 pKa = 3.96

Molecular weight: 38.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A346BP67|A0A346BP67_9VIRU Putative capsid protein OS=Tubeweb spider associated circular virus 1 OX=2293308 PE=4 SV=1
MM1 pKa = 7.71AYY3 pKa = 10.24SRR5 pKa = 11.84ARR7 pKa = 11.84TYY9 pKa = 10.45RR10 pKa = 11.84RR11 pKa = 11.84PYY13 pKa = 10.05RR14 pKa = 11.84KK15 pKa = 9.38RR16 pKa = 11.84SGPKK20 pKa = 9.26SRR22 pKa = 11.84RR23 pKa = 11.84STGKK27 pKa = 9.47KK28 pKa = 6.78RR29 pKa = 11.84TYY31 pKa = 10.71RR32 pKa = 11.84KK33 pKa = 7.58TKK35 pKa = 8.11KK36 pKa = 8.64TSRR39 pKa = 11.84PMSNKK44 pKa = 9.89KK45 pKa = 9.88ILDD48 pKa = 3.29LTSRR52 pKa = 11.84KK53 pKa = 9.67KK54 pKa = 10.37RR55 pKa = 11.84DD56 pKa = 3.23TMAPYY61 pKa = 10.24YY62 pKa = 8.72NTYY65 pKa = 10.43GSSPLTGLGGYY76 pKa = 6.44TANGNGGGAQAYY88 pKa = 7.68TGLLWLATARR98 pKa = 11.84DD99 pKa = 3.7NTLASGGSVSNINDD113 pKa = 3.68LAARR117 pKa = 11.84TATACYY123 pKa = 9.63MRR125 pKa = 11.84GLKK128 pKa = 10.38EE129 pKa = 3.84NVEE132 pKa = 4.36ISTSSGAPWQWRR144 pKa = 11.84RR145 pKa = 11.84ICFTFRR151 pKa = 11.84DD152 pKa = 4.06PSVVLSGTGIPPYY165 pKa = 10.77LEE167 pKa = 4.04TSNGYY172 pKa = 10.28ARR174 pKa = 11.84LLANFTNSDD183 pKa = 3.62SAGVATHH190 pKa = 6.53GAITRR195 pKa = 11.84LIFKK199 pKa = 8.95GQQNVDD205 pKa = 2.85WNDD208 pKa = 2.52IRR210 pKa = 11.84TAPIDD215 pKa = 3.58NARR218 pKa = 11.84VDD220 pKa = 4.01LKK222 pKa = 10.91YY223 pKa = 10.74DD224 pKa = 2.81KK225 pKa = 11.27TMIVSSGNANGRR237 pKa = 11.84VKK239 pKa = 10.41LFKK242 pKa = 9.42MWHH245 pKa = 6.16PMNKK249 pKa = 8.39TLVYY253 pKa = 10.81DD254 pKa = 4.05DD255 pKa = 5.29DD256 pKa = 4.93EE257 pKa = 6.01NGEE260 pKa = 4.4AEE262 pKa = 4.1NSTVFSVGDD271 pKa = 3.41KK272 pKa = 10.75RR273 pKa = 11.84GMGDD277 pKa = 3.45YY278 pKa = 10.86YY279 pKa = 11.49VIDD282 pKa = 4.2FLQAGMGATSSDD294 pKa = 3.51SLNFNPTATLYY305 pKa = 8.61WHH307 pKa = 6.59EE308 pKa = 4.22RR309 pKa = 3.47

Molecular weight: 34.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

642

309

333

321.0

36.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.854 ± 1.027

1.246 ± 0.394

6.386 ± 0.369

4.361 ± 1.379

4.829 ± 1.474

9.813 ± 0.282

1.713 ± 0.489

3.583 ± 0.015

5.763 ± 0.254

6.854 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.336 ± 0.379

5.452 ± 0.885

4.517 ± 0.417

2.181 ± 0.37

7.477 ± 0.617

6.854 ± 1.24

7.009 ± 1.563

4.829 ± 0.409

2.804 ± 0.567

5.14 ± 0.238
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski