Planococcus massiliensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planococcus

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3353 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A098EI80|A0A098EI80_9BACL Gamma-DL-glutamyl hydrolase OS=Planococcus massiliensis OX=1499687 GN=pgdS PE=3 SV=1
MM1 pKa = 7.72EE2 pKa = 5.48KK3 pKa = 10.69LNYY6 pKa = 10.34LILLLMAIFLVGCTDD21 pKa = 3.4IEE23 pKa = 4.3DD24 pKa = 3.93TASVEE29 pKa = 4.23EE30 pKa = 4.16TDD32 pKa = 3.41TDD34 pKa = 3.75VKK36 pKa = 10.74EE37 pKa = 4.16VSTVEE42 pKa = 4.11EE43 pKa = 4.33EE44 pKa = 4.39SSEE47 pKa = 4.21EE48 pKa = 3.86ATPEE52 pKa = 3.81AVEE55 pKa = 4.22EE56 pKa = 4.06EE57 pKa = 4.59LVAEE61 pKa = 4.21EE62 pKa = 4.64TPTEE66 pKa = 3.98EE67 pKa = 3.76TAAAPTDD74 pKa = 3.85DD75 pKa = 5.73LFAGYY80 pKa = 10.64NLIEE84 pKa = 4.21VDD86 pKa = 4.1GGDD89 pKa = 3.57LSGHH93 pKa = 6.18RR94 pKa = 11.84EE95 pKa = 3.97ANVVVDD101 pKa = 3.59IGFGDD106 pKa = 3.52RR107 pKa = 11.84EE108 pKa = 3.96YY109 pKa = 10.09WAFTNEE115 pKa = 3.57HH116 pKa = 5.5GQLVRR121 pKa = 11.84VIASEE126 pKa = 5.68IILQDD131 pKa = 4.01DD132 pKa = 3.44NTEE135 pKa = 4.19PVTSSGRR142 pKa = 11.84YY143 pKa = 8.54YY144 pKa = 9.99PDD146 pKa = 3.2EE147 pKa = 4.48AKK149 pKa = 10.97VPGVEE154 pKa = 5.25SPTLDD159 pKa = 3.7EE160 pKa = 4.32GHH162 pKa = 6.82VIADD166 pKa = 3.61SLGGVSNAYY175 pKa = 10.43NITPQEE181 pKa = 4.15STLNRR186 pKa = 11.84YY187 pKa = 8.77GDD189 pKa = 3.46QAYY192 pKa = 9.09MEE194 pKa = 4.31DD195 pKa = 4.39VIRR198 pKa = 11.84KK199 pKa = 9.54AGGAVDD205 pKa = 4.61FEE207 pKa = 5.36AIITYY212 pKa = 9.91PDD214 pKa = 3.66TEE216 pKa = 4.39TQIPSHH222 pKa = 5.38YY223 pKa = 10.19QYY225 pKa = 11.01TYY227 pKa = 9.12TVNGNKK233 pKa = 9.31VVDD236 pKa = 4.09NYY238 pKa = 11.79DD239 pKa = 3.3NVNPDD244 pKa = 3.55EE245 pKa = 4.5VNEE248 pKa = 4.18SLGLTGGDD256 pKa = 3.06APEE259 pKa = 4.15AAEE262 pKa = 4.89AEE264 pKa = 4.58PEE266 pKa = 4.27SAPAAPAPAAGGDD279 pKa = 3.76VSSVDD284 pKa = 3.28TDD286 pKa = 3.62GNGQVTIKK294 pKa = 9.56EE295 pKa = 3.92AKK297 pKa = 9.66AAGFSMPIMSDD308 pKa = 2.56HH309 pKa = 6.56WLYY312 pKa = 10.6PYY314 pKa = 10.18MRR316 pKa = 11.84DD317 pKa = 3.38NDD319 pKa = 3.64NDD321 pKa = 3.78GMVGEE326 pKa = 4.62

Molecular weight: 35.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A098EHE5|A0A098EHE5_9BACL Laccase domain protein OS=Planococcus massiliensis OX=1499687 GN=BN1080_00141 PE=3 SV=1
MM1 pKa = 7.61TLRR4 pKa = 11.84TYY6 pKa = 10.57QPNTRR11 pKa = 11.84KK12 pKa = 9.66HH13 pKa = 5.87SKK15 pKa = 8.83VHH17 pKa = 5.7GFRR20 pKa = 11.84ARR22 pKa = 11.84MSTKK26 pKa = 9.71NGRR29 pKa = 11.84RR30 pKa = 11.84VIAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 8.8GRR40 pKa = 11.84KK41 pKa = 8.75VLSAA45 pKa = 4.05

Molecular weight: 5.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3353

0

3353

986772

29

1528

294.3

32.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.417 ± 0.046

0.556 ± 0.01

5.108 ± 0.03

8.054 ± 0.053

4.62 ± 0.036

7.168 ± 0.043

2.002 ± 0.021

7.258 ± 0.04

6.209 ± 0.035

9.8 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.937 ± 0.021

3.834 ± 0.031

3.764 ± 0.02

3.655 ± 0.03

4.166 ± 0.032

5.905 ± 0.037

5.274 ± 0.029

6.975 ± 0.035

1.029 ± 0.017

3.267 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski