Desulfovibrio senegalensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3062 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6N6N609|A0A6N6N609_9DELT TrkA family potassium uptake protein OS=Desulfovibrio senegalensis OX=1721087 GN=F8A88_04455 PE=4 SV=1
MM1 pKa = 7.3KK2 pKa = 10.1RR3 pKa = 11.84LVMLAVLCAFAFGMAATAASAADD26 pKa = 3.39IKK28 pKa = 11.05ATGTYY33 pKa = 8.68TFEE36 pKa = 4.86AVWGDD41 pKa = 3.48NSFDD45 pKa = 6.22DD46 pKa = 5.76DD47 pKa = 4.96DD48 pKa = 4.4QDD50 pKa = 4.39SDD52 pKa = 3.77FDD54 pKa = 4.07VYY56 pKa = 11.17QRR58 pKa = 11.84LRR60 pKa = 11.84TKK62 pKa = 10.76FEE64 pKa = 4.61FIANEE69 pKa = 3.79NLKK72 pKa = 10.57GVLYY76 pKa = 10.13TEE78 pKa = 4.99VGTSTWGSTMHH89 pKa = 6.4VGTDD93 pKa = 2.89IDD95 pKa = 4.07DD96 pKa = 4.2LVTIKK101 pKa = 10.75AGYY104 pKa = 9.78IDD106 pKa = 5.02FNWPGTQQNIKK117 pKa = 9.83VGHH120 pKa = 6.42FGVALPNAVGGSIILDD136 pKa = 3.87DD137 pKa = 4.68EE138 pKa = 4.79LPSAVITGPITDD150 pKa = 3.59NVSYY154 pKa = 11.12LLGWHH159 pKa = 6.81RR160 pKa = 11.84LDD162 pKa = 5.24KK163 pKa = 11.24SGAQNGTDD171 pKa = 3.73DD172 pKa = 4.4EE173 pKa = 5.47LDD175 pKa = 3.62AVAMALPLNFDD186 pKa = 4.06GVSVAPFILAAYY198 pKa = 10.09AGDD201 pKa = 3.97NYY203 pKa = 10.8DD204 pKa = 4.05ANVTNSITWAGVSFEE219 pKa = 4.65LTMFDD224 pKa = 3.55PFVFKK229 pKa = 11.05ADD231 pKa = 3.92LNYY234 pKa = 10.73GQADD238 pKa = 3.82YY239 pKa = 11.5EE240 pKa = 4.21NAEE243 pKa = 4.76DD244 pKa = 3.73QDD246 pKa = 3.21GWYY249 pKa = 9.93FATSAEE255 pKa = 4.2YY256 pKa = 10.47KK257 pKa = 10.58GFDD260 pKa = 3.57FMTPEE265 pKa = 3.78AFFVYY270 pKa = 8.09TTGDD274 pKa = 3.88DD275 pKa = 3.87NNVTYY280 pKa = 10.58AGEE283 pKa = 4.12DD284 pKa = 3.63QMPLLAGDD292 pKa = 3.64WAVGSFFFGGDD303 pKa = 2.91WGIGAQSSIDD313 pKa = 4.3ADD315 pKa = 4.27ANWLGFWTLGVSLKK329 pKa = 10.68DD330 pKa = 3.03ISFFEE335 pKa = 4.64GLTHH339 pKa = 6.17TVNVLYY345 pKa = 10.32IQGTNDD351 pKa = 3.29KK352 pKa = 10.76DD353 pKa = 3.53NFIAGDD359 pKa = 3.73LTYY362 pKa = 11.11LNEE365 pKa = 5.87DD366 pKa = 3.49DD367 pKa = 5.68SLWEE371 pKa = 4.23LDD373 pKa = 3.97LNSAYY378 pKa = 10.56SIYY381 pKa = 10.71DD382 pKa = 3.27EE383 pKa = 3.96LTAYY387 pKa = 10.66VEE389 pKa = 4.69LGWIAPDD396 pKa = 3.32WDD398 pKa = 3.54NDD400 pKa = 3.54RR401 pKa = 11.84NINDD405 pKa = 3.47DD406 pKa = 4.03EE407 pKa = 4.2AWKK410 pKa = 10.95VSTGLNYY417 pKa = 9.91VFF419 pKa = 5.39

Molecular weight: 46.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6N6N5U1|A0A6N6N5U1_9DELT Histidine kinase OS=Desulfovibrio senegalensis OX=1721087 GN=F8A88_00810 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.25QPSKK9 pKa = 7.98TRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 7.99RR14 pKa = 11.84THH16 pKa = 5.86GFLVRR21 pKa = 11.84SRR23 pKa = 11.84TKK25 pKa = 10.5NGRR28 pKa = 11.84KK29 pKa = 9.22VIARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.8GRR39 pKa = 11.84KK40 pKa = 8.66RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3062

0

3062

1003229

28

2808

327.6

36.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.529 ± 0.059

1.405 ± 0.02

5.828 ± 0.037

6.503 ± 0.046

4.067 ± 0.029

7.946 ± 0.045

2.21 ± 0.021

5.194 ± 0.037

4.608 ± 0.045

10.084 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.18 ± 0.021

3.278 ± 0.025

4.584 ± 0.029

3.355 ± 0.025

6.293 ± 0.049

5.549 ± 0.027

5.081 ± 0.033

7.531 ± 0.038

1.171 ± 0.018

2.603 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski