Amino acid dipepetide frequency for Blackberry virus Y (isolate Blackberry plant/USA:Arkansas/C3ARK/2005) (BVY)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.298AlaAla: 4.298 ± 0.0
0.86AlaCys: 0.86 ± 0.0
4.585AlaAsp: 4.585 ± 0.0
2.579AlaGlu: 2.579 ± 0.0
1.433AlaPhe: 1.433 ± 0.0
1.433AlaGly: 1.433 ± 0.0
2.579AlaHis: 2.579 ± 0.0
4.871AlaIle: 4.871 ± 0.0
2.865AlaLys: 2.865 ± 0.0
8.596AlaLeu: 8.596 ± 0.0
2.292AlaMet: 2.292 ± 0.0
3.438AlaAsn: 3.438 ± 0.0
3.152AlaPro: 3.152 ± 0.0
2.579AlaGln: 2.579 ± 0.0
4.871AlaArg: 4.871 ± 0.0
4.871AlaSer: 4.871 ± 0.0
6.017AlaThr: 6.017 ± 0.0
2.579AlaVal: 2.579 ± 0.0
0.86AlaTrp: 0.86 ± 0.0
2.006AlaTyr: 2.006 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.573CysAla: 0.573 ± 0.0
0.287CysCys: 0.287 ± 0.0
3.152CysAsp: 3.152 ± 0.0
0.86CysGlu: 0.86 ± 0.0
0.86CysPhe: 0.86 ± 0.0
1.146CysGly: 1.146 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.86CysIle: 0.86 ± 0.0
0.573CysLys: 0.573 ± 0.0
1.719CysLeu: 1.719 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.287CysAsn: 0.287 ± 0.0
0.573CysPro: 0.573 ± 0.0
0.287CysGln: 0.287 ± 0.0
0.573CysArg: 0.573 ± 0.0
0.573CysSer: 0.573 ± 0.0
1.433CysThr: 1.433 ± 0.0
2.006CysVal: 2.006 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.287CysTyr: 0.287 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.731AspAla: 5.731 ± 0.0
1.146AspCys: 1.146 ± 0.0
4.585AspAsp: 4.585 ± 0.0
4.011AspGlu: 4.011 ± 0.0
4.585AspPhe: 4.585 ± 0.0
3.725AspGly: 3.725 ± 0.0
1.146AspHis: 1.146 ± 0.0
2.865AspIle: 2.865 ± 0.0
2.292AspLys: 2.292 ± 0.0
4.871AspLeu: 4.871 ± 0.0
1.719AspMet: 1.719 ± 0.0
2.006AspAsn: 2.006 ± 0.0
2.865AspPro: 2.865 ± 0.0
0.573AspGln: 0.573 ± 0.0
2.292AspArg: 2.292 ± 0.0
2.865AspSer: 2.865 ± 0.0
4.298AspThr: 4.298 ± 0.0
5.731AspVal: 5.731 ± 0.0
0.287AspTrp: 0.287 ± 0.0
2.292AspTyr: 2.292 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.438GluAla: 3.438 ± 0.0
1.146GluCys: 1.146 ± 0.0
2.579GluAsp: 2.579 ± 0.0
2.865GluGlu: 2.865 ± 0.0
2.865GluPhe: 2.865 ± 0.0
3.725GluGly: 3.725 ± 0.0
1.719GluHis: 1.719 ± 0.0
2.865GluIle: 2.865 ± 0.0
2.865GluLys: 2.865 ± 0.0
6.017GluLeu: 6.017 ± 0.0
0.86GluMet: 0.86 ± 0.0
1.433GluAsn: 1.433 ± 0.0
3.438GluPro: 3.438 ± 0.0
2.579GluGln: 2.579 ± 0.0
4.871GluArg: 4.871 ± 0.0
4.011GluSer: 4.011 ± 0.0
4.011GluThr: 4.011 ± 0.0
3.152GluVal: 3.152 ± 0.0
0.573GluTrp: 0.573 ± 0.0
1.719GluTyr: 1.719 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.725PheAla: 3.725 ± 0.0
0.573PheCys: 0.573 ± 0.0
3.438PheAsp: 3.438 ± 0.0
3.725PheGlu: 3.725 ± 0.0
2.006PhePhe: 2.006 ± 0.0
3.152PheGly: 3.152 ± 0.0
0.287PheHis: 0.287 ± 0.0
2.292PheIle: 2.292 ± 0.0
2.006PheLys: 2.006 ± 0.0
0.86PheLeu: 0.86 ± 0.0
1.146PheMet: 1.146 ± 0.0
2.006PheAsn: 2.006 ± 0.0
2.006PhePro: 2.006 ± 0.0
2.865PheGln: 2.865 ± 0.0
2.292PheArg: 2.292 ± 0.0
2.292PheSer: 2.292 ± 0.0
2.006PheThr: 2.006 ± 0.0
3.152PheVal: 3.152 ± 0.0
0.0PheTrp: 0.0 ± 0.0
2.006PheTyr: 2.006 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.152GlyAla: 3.152 ± 0.0
0.287GlyCys: 0.287 ± 0.0
4.298GlyAsp: 4.298 ± 0.0
3.152GlyGlu: 3.152 ± 0.0
3.152GlyPhe: 3.152 ± 0.0
2.865GlyGly: 2.865 ± 0.0
0.86GlyHis: 0.86 ± 0.0
3.152GlyIle: 3.152 ± 0.0
4.298GlyLys: 4.298 ± 0.0
3.438GlyLeu: 3.438 ± 0.0
0.86GlyMet: 0.86 ± 0.0
2.006GlyAsn: 2.006 ± 0.0
2.579GlyPro: 2.579 ± 0.0
2.292GlyGln: 2.292 ± 0.0
3.152GlyArg: 3.152 ± 0.0
5.444GlySer: 5.444 ± 0.0
4.871GlyThr: 4.871 ± 0.0
3.438GlyVal: 3.438 ± 0.0
0.287GlyTrp: 0.287 ± 0.0
3.152GlyTyr: 3.152 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.719HisAla: 1.719 ± 0.0
0.573HisCys: 0.573 ± 0.0
1.433HisAsp: 1.433 ± 0.0
2.292HisGlu: 2.292 ± 0.0
0.573HisPhe: 0.573 ± 0.0
2.006HisGly: 2.006 ± 0.0
0.86HisHis: 0.86 ± 0.0
1.719HisIle: 1.719 ± 0.0
1.433HisLys: 1.433 ± 0.0
2.865HisLeu: 2.865 ± 0.0
0.86HisMet: 0.86 ± 0.0
2.292HisAsn: 2.292 ± 0.0
1.433HisPro: 1.433 ± 0.0
0.86HisGln: 0.86 ± 0.0
1.719HisArg: 1.719 ± 0.0
0.86HisSer: 0.86 ± 0.0
1.719HisThr: 1.719 ± 0.0
2.292HisVal: 2.292 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.86HisTyr: 0.86 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
2.865IleAla: 2.865 ± 0.0
0.86IleCys: 0.86 ± 0.0
3.725IleAsp: 3.725 ± 0.0
2.292IleGlu: 2.292 ± 0.0
3.152IlePhe: 3.152 ± 0.0
1.719IleGly: 1.719 ± 0.0
1.433IleHis: 1.433 ± 0.0
4.585IleIle: 4.585 ± 0.0
3.438IleLys: 3.438 ± 0.0
4.585IleLeu: 4.585 ± 0.0
1.433IleMet: 1.433 ± 0.0
2.292IleAsn: 2.292 ± 0.0
4.011IlePro: 4.011 ± 0.0
3.152IleGln: 3.152 ± 0.0
3.152IleArg: 3.152 ± 0.0
3.725IleSer: 3.725 ± 0.0
6.59IleThr: 6.59 ± 0.0
4.585IleVal: 4.585 ± 0.0
0.86IleTrp: 0.86 ± 0.0
2.292IleTyr: 2.292 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.011LysAla: 4.011 ± 0.0
0.86LysCys: 0.86 ± 0.0
2.579LysAsp: 2.579 ± 0.0
3.152LysGlu: 3.152 ± 0.0
2.579LysPhe: 2.579 ± 0.0
2.865LysGly: 2.865 ± 0.0
2.006LysHis: 2.006 ± 0.0
4.585LysIle: 4.585 ± 0.0
4.298LysLys: 4.298 ± 0.0
4.298LysLeu: 4.298 ± 0.0
0.573LysMet: 0.573 ± 0.0
1.719LysAsn: 1.719 ± 0.0
2.292LysPro: 2.292 ± 0.0
3.152LysGln: 3.152 ± 0.0
4.585LysArg: 4.585 ± 0.0
2.579LysSer: 2.579 ± 0.0
2.292LysThr: 2.292 ± 0.0
2.292LysVal: 2.292 ± 0.0
0.287LysTrp: 0.287 ± 0.0
2.865LysTyr: 2.865 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
4.871LeuAla: 4.871 ± 0.0
1.433LeuCys: 1.433 ± 0.0
2.579LeuAsp: 2.579 ± 0.0
4.585LeuGlu: 4.585 ± 0.0
2.579LeuPhe: 2.579 ± 0.0
4.298LeuGly: 4.298 ± 0.0
2.292LeuHis: 2.292 ± 0.0
4.298LeuIle: 4.298 ± 0.0
4.298LeuLys: 4.298 ± 0.0
8.023LeuLeu: 8.023 ± 0.0
2.292LeuMet: 2.292 ± 0.0
5.731LeuAsn: 5.731 ± 0.0
6.304LeuPro: 6.304 ± 0.0
5.158LeuGln: 5.158 ± 0.0
4.585LeuArg: 4.585 ± 0.0
5.444LeuSer: 5.444 ± 0.0
5.158LeuThr: 5.158 ± 0.0
4.585LeuVal: 4.585 ± 0.0
0.0LeuTrp: 0.0 ± 0.0
2.865LeuTyr: 2.865 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.719MetAla: 1.719 ± 0.0
0.573MetCys: 0.573 ± 0.0
1.146MetAsp: 1.146 ± 0.0
0.573MetGlu: 0.573 ± 0.0
1.433MetPhe: 1.433 ± 0.0
1.433MetGly: 1.433 ± 0.0
1.146MetHis: 1.146 ± 0.0
1.146MetIle: 1.146 ± 0.0
1.433MetLys: 1.433 ± 0.0
2.006MetLeu: 2.006 ± 0.0
0.86MetMet: 0.86 ± 0.0
0.287MetAsn: 0.287 ± 0.0
2.292MetPro: 2.292 ± 0.0
1.146MetGln: 1.146 ± 0.0
2.006MetArg: 2.006 ± 0.0
1.719MetSer: 1.719 ± 0.0
1.433MetThr: 1.433 ± 0.0
1.433MetVal: 1.433 ± 0.0
0.287MetTrp: 0.287 ± 0.0
1.146MetTyr: 1.146 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.152AsnAla: 3.152 ± 0.0
0.573AsnCys: 0.573 ± 0.0
1.719AsnAsp: 1.719 ± 0.0
2.006AsnGlu: 2.006 ± 0.0
1.146AsnPhe: 1.146 ± 0.0
3.725AsnGly: 3.725 ± 0.0
1.146AsnHis: 1.146 ± 0.0
3.438AsnIle: 3.438 ± 0.0
4.011AsnLys: 4.011 ± 0.0
3.152AsnLeu: 3.152 ± 0.0
2.579AsnMet: 2.579 ± 0.0
3.725AsnAsn: 3.725 ± 0.0
2.292AsnPro: 2.292 ± 0.0
0.86AsnGln: 0.86 ± 0.0
2.006AsnArg: 2.006 ± 0.0
1.719AsnSer: 1.719 ± 0.0
3.438AsnThr: 3.438 ± 0.0
4.871AsnVal: 4.871 ± 0.0
0.287AsnTrp: 0.287 ± 0.0
1.719AsnTyr: 1.719 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
3.152ProAla: 3.152 ± 0.0
0.287ProCys: 0.287 ± 0.0
2.579ProAsp: 2.579 ± 0.0
5.158ProGlu: 5.158 ± 0.0
3.438ProPhe: 3.438 ± 0.0
1.719ProGly: 1.719 ± 0.0
0.573ProHis: 0.573 ± 0.0
4.298ProIle: 4.298 ± 0.0
2.006ProLys: 2.006 ± 0.0
3.438ProLeu: 3.438 ± 0.0
1.433ProMet: 1.433 ± 0.0
1.719ProAsn: 1.719 ± 0.0
3.152ProPro: 3.152 ± 0.0
1.146ProGln: 1.146 ± 0.0
1.719ProArg: 1.719 ± 0.0
3.152ProSer: 3.152 ± 0.0
4.585ProThr: 4.585 ± 0.0
5.444ProVal: 5.444 ± 0.0
0.86ProTrp: 0.86 ± 0.0
1.719ProTyr: 1.719 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.579GlnAla: 2.579 ± 0.0
0.573GlnCys: 0.573 ± 0.0
2.292GlnAsp: 2.292 ± 0.0
2.292GlnGlu: 2.292 ± 0.0
1.433GlnPhe: 1.433 ± 0.0
0.287GlnGly: 0.287 ± 0.0
1.146GlnHis: 1.146 ± 0.0
2.865GlnIle: 2.865 ± 0.0
0.86GlnLys: 0.86 ± 0.0
2.865GlnLeu: 2.865 ± 0.0
0.573GlnMet: 0.573 ± 0.0
2.006GlnAsn: 2.006 ± 0.0
2.292GlnPro: 2.292 ± 0.0
3.438GlnGln: 3.438 ± 0.0
3.438GlnArg: 3.438 ± 0.0
3.152GlnSer: 3.152 ± 0.0
2.865GlnThr: 2.865 ± 0.0
5.158GlnVal: 5.158 ± 0.0
0.573GlnTrp: 0.573 ± 0.0
2.292GlnTyr: 2.292 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
4.298ArgAla: 4.298 ± 0.0
0.86ArgCys: 0.86 ± 0.0
2.579ArgAsp: 2.579 ± 0.0
4.298ArgGlu: 4.298 ± 0.0
0.573ArgPhe: 0.573 ± 0.0
4.298ArgGly: 4.298 ± 0.0
2.865ArgHis: 2.865 ± 0.0
2.292ArgIle: 2.292 ± 0.0
4.585ArgLys: 4.585 ± 0.0
4.011ArgLeu: 4.011 ± 0.0
0.86ArgMet: 0.86 ± 0.0
4.298ArgAsn: 4.298 ± 0.0
1.146ArgPro: 1.146 ± 0.0
2.579ArgGln: 2.579 ± 0.0
3.725ArgArg: 3.725 ± 0.0
3.438ArgSer: 3.438 ± 0.0
4.871ArgThr: 4.871 ± 0.0
5.158ArgVal: 5.158 ± 0.0
0.573ArgTrp: 0.573 ± 0.0
2.006ArgTyr: 2.006 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
4.585SerAla: 4.585 ± 0.0
2.579SerCys: 2.579 ± 0.0
5.444SerAsp: 5.444 ± 0.0
3.438SerGlu: 3.438 ± 0.0
1.146SerPhe: 1.146 ± 0.0
5.731SerGly: 5.731 ± 0.0
1.433SerHis: 1.433 ± 0.0
3.438SerIle: 3.438 ± 0.0
2.579SerLys: 2.579 ± 0.0
5.444SerLeu: 5.444 ± 0.0
1.146SerMet: 1.146 ± 0.0
3.438SerAsn: 3.438 ± 0.0
1.719SerPro: 1.719 ± 0.0
3.152SerGln: 3.152 ± 0.0
2.006SerArg: 2.006 ± 0.0
5.158SerSer: 5.158 ± 0.0
4.298SerThr: 4.298 ± 0.0
2.579SerVal: 2.579 ± 0.0
0.573SerTrp: 0.573 ± 0.0
0.573SerTyr: 0.573 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.871ThrAla: 4.871 ± 0.0
1.719ThrCys: 1.719 ± 0.0
2.006ThrAsp: 2.006 ± 0.0
2.579ThrGlu: 2.579 ± 0.0
3.725ThrPhe: 3.725 ± 0.0
4.298ThrGly: 4.298 ± 0.0
2.292ThrHis: 2.292 ± 0.0
3.725ThrIle: 3.725 ± 0.0
3.438ThrLys: 3.438 ± 0.0
6.304ThrLeu: 6.304 ± 0.0
2.006ThrMet: 2.006 ± 0.0
2.865ThrAsn: 2.865 ± 0.0
4.011ThrPro: 4.011 ± 0.0
3.152ThrGln: 3.152 ± 0.0
4.298ThrArg: 4.298 ± 0.0
5.444ThrSer: 5.444 ± 0.0
7.45ThrThr: 7.45 ± 0.0
4.298ThrVal: 4.298 ± 0.0
1.433ThrTrp: 1.433 ± 0.0
2.292ThrTyr: 2.292 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.731ValAla: 5.731 ± 0.0
0.573ValCys: 0.573 ± 0.0
5.158ValAsp: 5.158 ± 0.0
4.298ValGlu: 4.298 ± 0.0
2.865ValPhe: 2.865 ± 0.0
5.444ValGly: 5.444 ± 0.0
2.865ValHis: 2.865 ± 0.0
5.158ValIle: 5.158 ± 0.0
4.011ValLys: 4.011 ± 0.0
5.444ValLeu: 5.444 ± 0.0
2.292ValMet: 2.292 ± 0.0
3.152ValAsn: 3.152 ± 0.0
4.871ValPro: 4.871 ± 0.0
2.579ValGln: 2.579 ± 0.0
4.871ValArg: 4.871 ± 0.0
2.579ValSer: 2.579 ± 0.0
2.579ValThr: 2.579 ± 0.0
5.444ValVal: 5.444 ± 0.0
0.573ValTrp: 0.573 ± 0.0
2.292ValTyr: 2.292 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.573TrpAla: 0.573 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.287TrpAsp: 0.287 ± 0.0
0.287TrpGlu: 0.287 ± 0.0
0.573TrpPhe: 0.573 ± 0.0
1.146TrpGly: 1.146 ± 0.0
0.287TrpHis: 0.287 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.86TrpLys: 0.86 ± 0.0
0.86TrpLeu: 0.86 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.287TrpAsn: 0.287 ± 0.0
0.287TrpPro: 0.287 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.573TrpArg: 0.573 ± 0.0
0.573TrpSer: 0.573 ± 0.0
0.573TrpThr: 0.573 ± 0.0
1.146TrpVal: 1.146 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.573TrpTyr: 0.573 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.006TyrAla: 2.006 ± 0.0
0.287TyrCys: 0.287 ± 0.0
3.725TyrAsp: 3.725 ± 0.0
2.292TyrGlu: 2.292 ± 0.0
1.719TyrPhe: 1.719 ± 0.0
1.719TyrGly: 1.719 ± 0.0
1.433TyrHis: 1.433 ± 0.0
2.292TyrIle: 2.292 ± 0.0
1.719TyrLys: 1.719 ± 0.0
2.579TyrLeu: 2.579 ± 0.0
1.146TyrMet: 1.146 ± 0.0
2.579TyrAsn: 2.579 ± 0.0
0.86TyrPro: 0.86 ± 0.0
1.433TyrGln: 1.433 ± 0.0
2.579TyrArg: 2.579 ± 0.0
0.86TyrSer: 0.86 ± 0.0
1.719TyrThr: 1.719 ± 0.0
3.438TyrVal: 3.438 ± 0.0
0.573TyrTrp: 0.573 ± 0.0
1.719TyrTyr: 1.719 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3491 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski