Streptococcus satellite phage Javan353

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 18 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D5ZKL3|A0A4D5ZKL3_9VIRU Uncharacterized protein OS=Streptococcus satellite phage Javan353 OX=2558654 GN=JavanS353_0002 PE=4 SV=1
MM1 pKa = 7.7EE2 pKa = 5.23IVEE5 pKa = 4.83DD6 pKa = 4.34CNSVITDD13 pKa = 3.9LWLSFYY19 pKa = 10.86KK20 pKa = 10.71LSEE23 pKa = 4.12AYY25 pKa = 9.6KK26 pKa = 8.6MQEE29 pKa = 3.54ASHH32 pKa = 6.42EE33 pKa = 4.0EE34 pKa = 4.33FYY36 pKa = 11.56NKK38 pKa = 9.88NVEE41 pKa = 4.11NLLGEE46 pKa = 4.27LKK48 pKa = 10.63KK49 pKa = 10.94YY50 pKa = 10.67DD51 pKa = 3.93DD52 pKa = 4.86EE53 pKa = 4.52CAEE56 pKa = 4.38MYY58 pKa = 10.28NKK60 pKa = 8.79KK61 pKa = 7.88TT62 pKa = 3.47

Molecular weight: 7.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D5ZMI8|A0A4D5ZMI8_9VIRU Uncharacterized protein OS=Streptococcus satellite phage Javan353 OX=2558654 GN=JavanS353_0005 PE=4 SV=1
MM1 pKa = 7.98IITQSQAKK9 pKa = 9.46ALRR12 pKa = 11.84RR13 pKa = 11.84KK14 pKa = 9.98KK15 pKa = 10.76ADD17 pKa = 3.54LQLKK21 pKa = 9.54NYY23 pKa = 9.21EE24 pKa = 4.01LAFEE28 pKa = 4.77IGVSPKK34 pKa = 9.47TVPKK38 pKa = 10.16ILKK41 pKa = 9.83GDD43 pKa = 3.5YY44 pKa = 9.18KK45 pKa = 10.76APKK48 pKa = 9.3RR49 pKa = 11.84IYY51 pKa = 10.12ASVMEE56 pKa = 4.73WLAKK60 pKa = 10.37DD61 pKa = 3.6YY62 pKa = 11.54

Molecular weight: 7.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

18

0

18

3100

53

388

172.2

20.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.065 ± 0.484

0.742 ± 0.152

6.29 ± 0.437

7.806 ± 0.823

5.032 ± 0.65

4.129 ± 0.506

1.645 ± 0.283

7.194 ± 0.558

11.387 ± 0.533

9.903 ± 0.323

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.226 ± 0.262

6.355 ± 0.476

2.032 ± 0.286

3.935 ± 0.294

4.258 ± 0.237

6.29 ± 0.382

5.968 ± 0.684

5.419 ± 0.358

0.71 ± 0.118

4.613 ± 0.333
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski