Thermogemmatispora tikiterensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Ktedonobacteria; Thermogemmatisporales; Thermogemmatisporaceae; Thermogemmatispora

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4652 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A328VE27|A0A328VE27_9CHLR HTH arsR-type domain-containing protein OS=Thermogemmatispora tikiterensis OX=1825093 GN=A4R35_10300 PE=4 SV=1
MM1 pKa = 7.61AWLDD5 pKa = 3.48STSRR9 pKa = 11.84CGYY12 pKa = 7.74TDD14 pKa = 3.14SVSIYY19 pKa = 10.55CRR21 pKa = 11.84VLLQKK26 pKa = 10.65DD27 pKa = 3.14CWLAVDD33 pKa = 4.62QPLSPARR40 pKa = 11.84TGSLRR45 pKa = 11.84GAFADD50 pKa = 4.29LEE52 pKa = 4.4EE53 pKa = 4.41EE54 pKa = 4.32QMTDD58 pKa = 3.61SPLTPDD64 pKa = 3.88PEE66 pKa = 4.29RR67 pKa = 11.84FPLPFLLHH75 pKa = 5.51YY76 pKa = 10.12LEE78 pKa = 5.04PVSEE82 pKa = 4.62RR83 pKa = 11.84EE84 pKa = 3.85DD85 pKa = 3.58DD86 pKa = 3.81LTISEE91 pKa = 4.67TPYY94 pKa = 9.37QTGPDD99 pKa = 4.15GPTHH103 pKa = 6.62TDD105 pKa = 3.24YY106 pKa = 11.73LDD108 pKa = 4.95DD109 pKa = 4.3EE110 pKa = 5.73DD111 pKa = 4.9ISGGAPTNTGQQADD125 pKa = 3.88SSPQEE130 pKa = 4.3DD131 pKa = 3.76AVVWWW136 pKa = 3.93

Molecular weight: 15.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A328VIL6|A0A328VIL6_9CHLR Spermine synthase OS=Thermogemmatispora tikiterensis OX=1825093 GN=A4R35_15180 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.45RR3 pKa = 11.84TWQPKK8 pKa = 8.26RR9 pKa = 11.84IPRR12 pKa = 11.84KK13 pKa = 9.39RR14 pKa = 11.84EE15 pKa = 3.38HH16 pKa = 6.69GFLKK20 pKa = 10.62RR21 pKa = 11.84MATRR25 pKa = 11.84AGRR28 pKa = 11.84RR29 pKa = 11.84VLKK32 pKa = 10.5ARR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.67GRR39 pKa = 11.84WRR41 pKa = 11.84LTVV44 pKa = 3.0

Molecular weight: 5.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4652

0

4652

1557656

31

2141

334.8

36.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.037 ± 0.043

1.071 ± 0.013

4.085 ± 0.024

6.539 ± 0.048

3.221 ± 0.02

7.713 ± 0.035

2.237 ± 0.016

4.644 ± 0.028

2.057 ± 0.025

12.711 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.813 ± 0.013

2.223 ± 0.023

5.893 ± 0.036

4.979 ± 0.034

7.725 ± 0.045

5.829 ± 0.033

5.087 ± 0.03

6.808 ± 0.032

1.527 ± 0.017

2.801 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski