Tortoise microvirus 108

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W776|A0A4P8W776_9VIRU Uncharacterized protein OS=Tortoise microvirus 108 OX=2583108 PE=4 SV=1
MM1 pKa = 7.54KK2 pKa = 10.36NALYY6 pKa = 10.43CLYY9 pKa = 9.15NTLSTRR15 pKa = 11.84YY16 pKa = 9.6GDD18 pKa = 3.94VVCFPSDD25 pKa = 2.88AFAVQRR31 pKa = 11.84IRR33 pKa = 11.84EE34 pKa = 4.01NLKK37 pKa = 10.28PEE39 pKa = 3.81MLKK42 pKa = 10.51EE43 pKa = 3.94IEE45 pKa = 4.23LCKK48 pKa = 10.11IGYY51 pKa = 9.42IDD53 pKa = 4.49IDD55 pKa = 3.46TGIAEE60 pKa = 4.08VHH62 pKa = 5.72PPIRR66 pKa = 11.84LSLIVDD72 pKa = 3.67EE73 pKa = 4.87TGVPIDD79 pKa = 4.06NLEE82 pKa = 4.0KK83 pKa = 10.87

Molecular weight: 9.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7D1|A0A4P8W7D1_9VIRU Uncharacterized protein OS=Tortoise microvirus 108 OX=2583108 PE=4 SV=1
MM1 pKa = 6.89MSSMRR6 pKa = 11.84SIAPSTRR13 pKa = 11.84LIGALRR19 pKa = 11.84DD20 pKa = 3.93TKK22 pKa = 11.49SMLVGSWDD30 pKa = 3.82CLHH33 pKa = 6.31FTAKK37 pKa = 9.33TLSRR41 pKa = 11.84VLFVPRR47 pKa = 11.84SYY49 pKa = 10.94RR50 pKa = 11.84CLMLTLQTVLFFQVAMLLVLMLPFYY75 pKa = 10.36FLRR78 pKa = 11.84RR79 pKa = 11.84LFRR82 pKa = 11.84RR83 pKa = 11.84LTIYY87 pKa = 10.86

Molecular weight: 10.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1797

83

596

224.6

25.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.401 ± 0.95

1.558 ± 0.578

6.01 ± 0.493

4.674 ± 0.933

5.62 ± 0.584

5.954 ± 0.48

1.725 ± 0.373

4.007 ± 0.561

4.285 ± 0.837

9.071 ± 0.858

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.283 ± 0.487

4.786 ± 0.552

4.508 ± 0.514

3.84 ± 1.276

6.177 ± 0.612

10.573 ± 1.038

5.509 ± 0.858

5.287 ± 0.489

0.946 ± 0.191

4.786 ± 0.503
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski