Trichoplusia ni granulovirus LBIV-12

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Betabaculovirus; Trichoplusia ni granulovirus

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 172 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1D8QL67|A0A1D8QL67_GVTN GIY-YIG domain-containing protein OS=Trichoplusia ni granulovirus LBIV-12 OX=1916701 PE=4 SV=1
MM1 pKa = 7.46GCDD4 pKa = 3.32SFITIYY10 pKa = 10.72FLDD13 pKa = 3.71EE14 pKa = 4.03HH15 pKa = 7.2DD16 pKa = 4.42KK17 pKa = 11.39VINKK21 pKa = 10.0LKK23 pKa = 7.69MTSYY27 pKa = 10.33KK28 pKa = 10.17QRR30 pKa = 11.84ALSQVITNPPEE41 pKa = 4.08AKK43 pKa = 10.15SIQVCFSDD51 pKa = 5.4DD52 pKa = 3.74NNEE55 pKa = 4.39CEE57 pKa = 5.56CEE59 pKa = 3.99YY60 pKa = 11.32CNIDD64 pKa = 6.25DD65 pKa = 5.04EE66 pKa = 6.58DD67 pKa = 4.56EE68 pKa = 4.84DD69 pKa = 4.69DD70 pKa = 3.95

Molecular weight: 8.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1D8QL90|A0A1D8QL90_GVTN p14.2 OS=Trichoplusia ni granulovirus LBIV-12 OX=1916701 PE=4 SV=1
MM1 pKa = 8.0DD2 pKa = 4.31NFDD5 pKa = 3.26RR6 pKa = 11.84TEE8 pKa = 3.94RR9 pKa = 11.84LRR11 pKa = 11.84STEE14 pKa = 3.68RR15 pKa = 11.84LLRR18 pKa = 11.84RR19 pKa = 11.84LIIIYY24 pKa = 10.06HH25 pKa = 6.12KK26 pKa = 10.66LYY28 pKa = 11.04TNMKK32 pKa = 8.1KK33 pKa = 10.82SNVIWQKK40 pKa = 11.05LFAISLLSTLRR51 pKa = 11.84FVEE54 pKa = 4.12RR55 pKa = 11.84TLKK58 pKa = 10.53IKK60 pKa = 10.47ILL62 pKa = 3.78

Molecular weight: 7.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

172

0

172

49643

50

1213

288.6

33.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.691 ± 0.131

2.445 ± 0.123

6.45 ± 0.116

5.499 ± 0.167

4.494 ± 0.143

3.735 ± 0.17

2.445 ± 0.109

6.063 ± 0.112

6.774 ± 0.221

9.335 ± 0.144

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.605 ± 0.09

7.113 ± 0.139

3.706 ± 0.118

3.944 ± 0.126

4.839 ± 0.136

6.339 ± 0.167

6.142 ± 0.158

7.256 ± 0.128

0.971 ± 0.057

5.151 ± 0.143
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski