Heterobasidion partitivirus 2

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; Betapartitivirus

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E1AB82|E1AB82_9VIRU Putative coat protein OS=Heterobasidion partitivirus 2 OX=872291 PE=4 SV=1
MM1 pKa = 7.05STNPPEE7 pKa = 4.27VLLPLPEE14 pKa = 4.2VDD16 pKa = 3.79PNANNVRR23 pKa = 11.84YY24 pKa = 9.87AKK26 pKa = 10.9LLDD29 pKa = 3.52QYY31 pKa = 10.96RR32 pKa = 11.84ANPSNSNQKK41 pKa = 10.44LLLEE45 pKa = 4.36YY46 pKa = 10.87AEE48 pKa = 4.0QHH50 pKa = 5.48GFNYY54 pKa = 9.08FIPTDD59 pKa = 3.52VPLPDD64 pKa = 4.49DD65 pKa = 4.2RR66 pKa = 11.84KK67 pKa = 9.51SAPGILSLDD76 pKa = 3.52GFRR79 pKa = 11.84FHH81 pKa = 6.47TVAAFHH87 pKa = 7.4RR88 pKa = 11.84YY89 pKa = 7.54QKK91 pKa = 9.8MSRR94 pKa = 11.84YY95 pKa = 9.59GYY97 pKa = 9.62NALGFIFKK105 pKa = 10.89LILTLFNPFLWILTDD120 pKa = 3.18YY121 pKa = 10.55CRR123 pKa = 11.84PSGSADD129 pKa = 2.93AVFEE133 pKa = 4.13NFNQEE138 pKa = 4.02VSPVEE143 pKa = 3.91HH144 pKa = 6.44VNPSRR149 pKa = 11.84LAQIMPLIHH158 pKa = 6.79HH159 pKa = 6.94FFAIKK164 pKa = 9.36PFCPIAFPDD173 pKa = 3.33LRR175 pKa = 11.84FYY177 pKa = 10.81KK178 pKa = 10.08WSLVTSADD186 pKa = 3.51YY187 pKa = 10.17HH188 pKa = 5.98AHH190 pKa = 6.38HH191 pKa = 7.1SKK193 pKa = 10.68DD194 pKa = 3.55QQDD197 pKa = 3.47EE198 pKa = 4.3SAHH201 pKa = 4.8YY202 pKa = 8.19WKK204 pKa = 10.36HH205 pKa = 6.37LKK207 pKa = 10.72DD208 pKa = 3.72SDD210 pKa = 4.06LLQDD214 pKa = 3.5RR215 pKa = 11.84FDD217 pKa = 3.83YY218 pKa = 10.92SDD220 pKa = 3.4RR221 pKa = 11.84PRR223 pKa = 11.84SKK225 pKa = 10.57GYY227 pKa = 10.26FFNTVLLSTRR237 pKa = 11.84TIVHH241 pKa = 6.64NIKK244 pKa = 9.99YY245 pKa = 9.83HH246 pKa = 5.78CLPFQRR252 pKa = 11.84HH253 pKa = 5.17KK254 pKa = 10.9RR255 pKa = 11.84DD256 pKa = 3.27TDD258 pKa = 3.64SSVLQKK264 pKa = 11.0LSFWFMKK271 pKa = 10.1YY272 pKa = 7.74PTVMYY277 pKa = 10.34VRR279 pKa = 11.84SQISKK284 pKa = 9.79LSKK287 pKa = 9.66LKK289 pKa = 10.44VRR291 pKa = 11.84PVYY294 pKa = 9.92NAPFLFILIEE304 pKa = 4.2AMLTLALMAQCRR316 pKa = 11.84LPDD319 pKa = 3.58SCLMWGFEE327 pKa = 4.28TVRR330 pKa = 11.84GGMQEE335 pKa = 4.17LNRR338 pKa = 11.84ISYY341 pKa = 10.69NYY343 pKa = 8.84DD344 pKa = 3.17TFIMIDD350 pKa = 3.26WSRR353 pKa = 11.84YY354 pKa = 8.48DD355 pKa = 3.21QLLPFAIIYY364 pKa = 7.86HH365 pKa = 6.0FWCTFLPQLIRR376 pKa = 11.84VDD378 pKa = 4.09LGYY381 pKa = 10.01MPTEE385 pKa = 4.17QYY387 pKa = 9.11TATQHH392 pKa = 5.42KK393 pKa = 9.52HH394 pKa = 5.51AFTEE398 pKa = 3.87KK399 pKa = 10.83HH400 pKa = 5.81NDD402 pKa = 3.36QKK404 pKa = 11.4EE405 pKa = 4.49SNPEE409 pKa = 3.69YY410 pKa = 10.34ATFASRR416 pKa = 11.84LKK418 pKa = 8.86THH420 pKa = 7.07APHH423 pKa = 7.38IVMFSFIIFNLLAFIWLWYY442 pKa = 9.44VKK444 pKa = 9.62MVFVTPDD451 pKa = 2.61GFGYY455 pKa = 10.45VRR457 pKa = 11.84LLAGVPSGIFMTQICDD473 pKa = 3.68SFCNAFLLIDD483 pKa = 3.81AMLEE487 pKa = 4.12FGFTPDD493 pKa = 4.12DD494 pKa = 3.39IKK496 pKa = 10.87LIRR499 pKa = 11.84MFIQGDD505 pKa = 3.96DD506 pKa = 3.4NVIFYY511 pKa = 10.84LGDD514 pKa = 3.4FTRR517 pKa = 11.84IFAFYY522 pKa = 9.59EE523 pKa = 3.88WLPEE527 pKa = 3.8YY528 pKa = 10.31CQQRR532 pKa = 11.84WHH534 pKa = 5.54MTISVDD540 pKa = 3.08KK541 pKa = 11.24SSITRR546 pKa = 11.84LRR548 pKa = 11.84NKK550 pKa = 10.0IEE552 pKa = 3.74VLGYY556 pKa = 9.4TNLNGMPHH564 pKa = 7.08RR565 pKa = 11.84DD566 pKa = 3.66CAKK569 pKa = 10.73LIATLAYY576 pKa = 9.14PEE578 pKa = 5.64RR579 pKa = 11.84YY580 pKa = 9.46VQDD583 pKa = 3.17KK584 pKa = 9.37TKK586 pKa = 10.91YY587 pKa = 8.47IVFMSRR593 pKa = 11.84AIGIAYY599 pKa = 9.92ANAGHH604 pKa = 6.99DD605 pKa = 3.68RR606 pKa = 11.84QVHH609 pKa = 5.51DD610 pKa = 4.3LCQRR614 pKa = 11.84AYY616 pKa = 10.42LQARR620 pKa = 11.84KK621 pKa = 10.04DD622 pKa = 3.42SGLSYY627 pKa = 11.39DD628 pKa = 3.55EE629 pKa = 4.82LKK631 pKa = 10.86NIKK634 pKa = 9.56IEE636 pKa = 3.99YY637 pKa = 8.7QKK639 pKa = 11.25LGFYY643 pKa = 10.4EE644 pKa = 3.94IFSVNIEE651 pKa = 4.11EE652 pKa = 4.59LRR654 pKa = 11.84EE655 pKa = 3.85HH656 pKa = 7.53LIQDD660 pKa = 3.29VSEE663 pKa = 4.6FPNFHH668 pKa = 7.79DD669 pKa = 3.4IRR671 pKa = 11.84DD672 pKa = 4.13NLRR675 pKa = 11.84HH676 pKa = 4.53WHH678 pKa = 6.38GPHH681 pKa = 5.59TVYY684 pKa = 10.85PMWPRR689 pKa = 11.84HH690 pKa = 5.63FDD692 pKa = 3.85DD693 pKa = 5.4DD694 pKa = 4.4LSSIKK699 pKa = 10.47SPHH702 pKa = 6.52SLTTLYY708 pKa = 11.14DD709 pKa = 3.56VMQSGGLTFDD719 pKa = 3.9YY720 pKa = 11.28NFF722 pKa = 3.99

Molecular weight: 84.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E1AB82|E1AB82_9VIRU Putative coat protein OS=Heterobasidion partitivirus 2 OX=872291 PE=4 SV=1
MM1 pKa = 7.78ADD3 pKa = 3.44KK4 pKa = 10.76VDD6 pKa = 3.74PPRR9 pKa = 11.84DD10 pKa = 3.7VVAEE14 pKa = 4.35TPPVPQPASSGRR26 pKa = 11.84TVVKK30 pKa = 10.13QRR32 pKa = 11.84HH33 pKa = 5.33PAQGAPTISLAKK45 pKa = 10.65VLDD48 pKa = 4.11LEE50 pKa = 4.6SDD52 pKa = 3.68VHH54 pKa = 7.12KK55 pKa = 11.18GKK57 pKa = 8.74GTYY60 pKa = 9.81HH61 pKa = 6.43SGSYY65 pKa = 10.27VPDD68 pKa = 2.96VRR70 pKa = 11.84FFVLSLCTYY79 pKa = 7.87YY80 pKa = 11.16GRR82 pKa = 11.84VFSATDD88 pKa = 3.38YY89 pKa = 9.55EE90 pKa = 4.42ASQFVTPPSLIAYY103 pKa = 9.48SLFCLYY109 pKa = 10.64FLLFYY114 pKa = 10.85RR115 pKa = 11.84DD116 pKa = 3.7MHH118 pKa = 6.79SKK120 pKa = 10.56SPSQYY125 pKa = 10.72ARR127 pKa = 11.84TFTDD131 pKa = 4.18FGRR134 pKa = 11.84YY135 pKa = 7.94NQLLKK140 pKa = 11.3LMDD143 pKa = 3.74EE144 pKa = 4.64VYY146 pKa = 10.51IPDD149 pKa = 4.68EE150 pKa = 4.01IFEE153 pKa = 4.37LLKK156 pKa = 10.99VFSVWSPEE164 pKa = 4.42LIPNLQFVPSLGSTLPLYY182 pKa = 9.69DD183 pKa = 3.97IPYY186 pKa = 9.62LMHH189 pKa = 6.92PAIFLHH195 pKa = 5.87GHH197 pKa = 4.6NTLFNRR203 pKa = 11.84ADD205 pKa = 3.52AVGHH209 pKa = 4.98YY210 pKa = 10.78ARR212 pKa = 11.84FLRR215 pKa = 11.84TEE217 pKa = 4.16LFSINSASLGNAARR231 pKa = 11.84IMTIGNLIGCAYY243 pKa = 8.88TPNATQGSARR253 pKa = 11.84LIQNWLSNAILPFVDD268 pKa = 3.97PATHH272 pKa = 6.05RR273 pKa = 11.84QHH275 pKa = 6.99LRR277 pKa = 11.84RR278 pKa = 11.84TGLAKK283 pKa = 10.37YY284 pKa = 10.4DD285 pKa = 3.65LGLPTFTSANWNPYY299 pKa = 8.67TFLFSSNVSSSFEE312 pKa = 4.05SFIDD316 pKa = 3.78CAHH319 pKa = 6.65ACSEE323 pKa = 4.34FSRR326 pKa = 11.84DD327 pKa = 3.25QLKK330 pKa = 10.63ASRR333 pKa = 11.84HH334 pKa = 4.43MSDD337 pKa = 4.83LYY339 pKa = 11.12SQVSPAPGSYY349 pKa = 9.65MIQSYY354 pKa = 7.35STPTWHH360 pKa = 6.59ATSLPSASFPDD371 pKa = 4.22GEE373 pKa = 4.3ITRR376 pKa = 11.84GDD378 pKa = 4.2FDD380 pKa = 4.4TLHH383 pKa = 5.13TTYY386 pKa = 10.14TFFGIAPAAATANSNNLHH404 pKa = 5.61MPEE407 pKa = 4.07VRR409 pKa = 11.84QNPATATSTLIGFVPNAYY427 pKa = 10.29LIEE430 pKa = 4.08QHH432 pKa = 7.02ADD434 pKa = 3.09PDD436 pKa = 4.05VAVPQQLSLIDD447 pKa = 3.9RR448 pKa = 11.84NEE450 pKa = 4.2MKK452 pKa = 9.36HH453 pKa = 5.01TRR455 pKa = 11.84PNILVFAPGDD465 pKa = 4.01STVSAAQWPILTGIVVHH482 pKa = 6.53NGNIDD487 pKa = 3.85SNVIKK492 pKa = 10.59APNPDD497 pKa = 3.91DD498 pKa = 5.43DD499 pKa = 4.9LPQIRR504 pKa = 11.84SRR506 pKa = 11.84YY507 pKa = 8.11VDD509 pKa = 3.25GFVSLRR515 pKa = 11.84VIRR518 pKa = 11.84PRR520 pKa = 11.84FANRR524 pKa = 11.84PTWLIARR531 pKa = 11.84QALEE535 pKa = 3.93RR536 pKa = 11.84VSYY539 pKa = 9.31STINFLWRR547 pKa = 11.84SDD549 pKa = 4.15LIAVPRR555 pKa = 11.84FDD557 pKa = 4.28AAHH560 pKa = 6.42NAPAAGGITGLLWPFTFFRR579 pKa = 11.84RR580 pKa = 11.84VTQMIFGTNVAVSDD594 pKa = 4.33SPTDD598 pKa = 3.51PTVASHH604 pKa = 6.12KK605 pKa = 10.09QVGDD609 pKa = 2.88AWSSFRR615 pKa = 11.84LTSDD619 pKa = 3.22SNAVPSVEE627 pKa = 3.65NTYY630 pKa = 10.86FGINHH635 pKa = 6.5GEE637 pKa = 3.93IIFGRR642 pKa = 11.84NSTLNKK648 pKa = 9.8FSHH651 pKa = 6.78PSDD654 pKa = 3.42LLRR657 pKa = 11.84RR658 pKa = 11.84NN659 pKa = 3.45

Molecular weight: 73.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1381

659

722

690.5

79.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.024 ± 1.111

1.159 ± 0.273

6.155 ± 0.369

3.186 ± 0.415

6.951 ± 0.499

4.345 ± 0.453

3.838 ± 0.341

5.865 ± 0.379

3.476 ± 0.924

9.486 ± 0.468

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.245 ± 0.497

4.779 ± 0.26

6.517 ± 0.732

3.765 ± 0.292

5.576 ± 0.13

7.893 ± 1.243

5.793 ± 0.812

5.576 ± 0.545

1.593 ± 0.155

4.779 ± 0.674
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski